Oryza glaberrima (African rice): 127754238
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Entry
127754238 CDS
T08853
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127754238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127754238
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127754238
U7-dependent histone pre-mRNA processing factors
127754238
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GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
UNC45-central
Motif
Other DBs
NCBI-GeneID:
127754238
NCBI-ProteinID:
XP_052135687
UniProt:
I1QY59
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All DBs
Position
11:3670131..3675143
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AA seq
495 aa
AA seq
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MAAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEY
KDEETALSARRNLQGYEINGRQLRVDFAENGRNADRNREKGRGGPGMASSVDTQKQLAGT
PVVGDTGLHQPVGLPSAIHAASVMAGILGGSQTANVQNGLPVQYGLGNDPLTHYLARMSK
HQLYEIMSELKSLTSQNKDVANKLLQGIPQLSKALFQSQIMLGMVTPQMMQMAKSQQPSS
SLAQSSSHISEPFPQPDAMIPSVPRPSASLPNPNVLQDPSAQLHNFPQYPHSSQPAGTIF
PHGSQSGVGIHPPIVSQPLGASSSVPPLPLATSGSLISQVQPPFMPHHPRPPAMPAGMQQ
LPLTHPHVPQVPAIPDIAQKEMRFPEQANRSTEFAHHPKLRKLEDGTSTPGIVNNNPAVY
PAPSQGMLPGGPSGSYNSAAVSFQQPENEVPQLTPDVESALLQQVLQLTPEQLSSLPVEQ
QQQVIQLQKMLSAGK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcggcccccgccggcgcccagaaccgctgcgtcttcgtcgggaacattcct
tacgatgcgacggaggagcagctcgtgcagatttgcgaggaagtcggccctgtggtctca
ttcagattggttattgataaagaaacagggaagccaaagggttatgggttttgtgagtac
aaggatgaggagactgctctaagtgcacgccggaaccttcaaggttatgaaattaatggc
cgtcagttacgtgttgattttgctgaaaatgggaggaatgctgacagaaacagagaaaag
ggtcgtggaggacctggaatggcatccagtgttgatactcagaaacaattagctgggact
ccggttgtaggcgatacaggtcttcatcagccagttggtcttccatcggctattcatgct
gcatctgtgatggctggtattcttggaggatctcaaactgcaaatgttcaaaatggttta
cctgtccagtatgggcttggaaatgaccctcttactcattatttggccagaatgtcaaag
caccagttgtatgaaatcatgtctgagttgaagtccctaactagtcaaaataaggatgtt
gccaacaaactgctgcaaggaattccacagctgtcaaaggccctatttcagtcacaaata
atgcttggaatggtgacgccccagatgatgcagatggcaaagagccaacagccctctagc
tccttggcacaatcatcatctcacataagcgaaccatttccacagccagatgctatgata
ccaagtgttccaagaccttctgcaagcttgccaaacccaaatgtcctgcaggacccttct
gcacagctgcataattttcctcagtatccgcattcatctcagcctgcgggcacaatattt
ccacatggaagtcagtctggggtgggcatacatcctccaattgtatctcaaccccttggt
gcctcttccagtgttcctcctctaccccttgctacctcaggaagcctgatatcgcaggtt
cagcccccatttatgccacatcaccctaggccaccagctatgccagcgggtatgcaacaa
ctaccattgactcatccacatgttccccaggtacctgctatacctgatatagcacagaag
gaaatgaggtttcctgagcaagcaaatcgttcgacggagtttgctcatcatccaaagttg
cgaaaattggaggatggaacatccacacctggaattgtaaacaacaatccagctgtttat
cctgctccatcccaaggaatgctccctggtggaccatcagggagctataattctgctgct
gttagcttccagcagccagagaacgaagtgcctcagctcacacccgatgttgagtcggct
cttctgcagcaagtcctacaactgacacctgagcagcttagttcgttgccagtagagcaa
caacagcaggtgattcagcttcaaaagatgctatcggctggtaaataa
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