Oryza glaberrima (African rice): 127754404
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Entry
127754404 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127754404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127754404
03012 Translation factors [BR:
ogl03012
]
127754404
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127754404
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127754404
Translation factors [BR:
ogl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127754404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
AAA_16
ATPase
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
127754404
NCBI-ProteinID:
XP_052135880
LinkDB
All DBs
Position
1:756134..766634
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AA seq
1247 aa
AA seq
DB search
MLLASCLRGRLRLHRRPRPLIMPSPLFLSRNPNPSPPRSATATGTTILSPPSTSASASMS
TSGVYVPPMRRLRSVIASTNGSLAPPPSAAAQAQPVRAPEWRADGRSLSPPPSPPRPPRR
ATPPPPRQPPPQPEPFRQRSAGYARYAYDDFSEDDSDREMDRTSVSSRGGSTLDNIDEWK
WKLHMLLRNEDEQEVISRERKDRRDFEQLSQLAERMGLYSRQYSRIVVFSKVPLPNYRSD
LDDKRPQREVSIPSGLQREVDALLSDYLARKRTSSGSFPNAAFSRSSSTDSFATDESFLE
QQDNQTSTSAVIERIQRRKSLQLRNQQESWQESHDGQSMMEFRRSLPAYKERQTLLEAIA
QNQVVVVSGETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERG
EKIGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNED
FLLIVLKDLLPRRPELRLVLMSATLNAELFSSYFGGAPMIHIPGFTYPVRSRFLEDILEI
TGHRLTPYNQIDDYGQEKSWKMQKQALRRRKSQIASVVEDTVQAADLRDYSARTRDSLSC
WNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLA
CHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQI
KSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLG
KMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAY
EGWREAERDRNGYDYCWKNFLSVQTLKAIDSLRRQFLFLLRDTGLVDENMTACNKWSRDE
NLVRAVICAGLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKETKIPFPWLVFNEKV
KVNSVFLRDSTAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSEL
DNLIHCKLQNPRMDIQTSEELLSAIRLLVTEDPCNGRFVYGRQEQRSKKAKTMFSAAPMS
HGGGGNGGDNAKNQLQTLLTRAGHDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKL
AEKDAAGEALNWLTGGAPSDSRDPQDMDHMSMLQKPPRRKRHHHRRG
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctcctgcctccggggtcgcctccgcctccaccgccggcctcgcccgctg
atcatgccctccccgctcttcctctcccggaaccctaatccttctcccccacgcagcgcc
actgccactggcaccaccatcctctccccgccctccacctccgcctccgcctccatgagc
accagcggggtctacgtcccgccgatgcggcgcctccgctccgtcatcgcgtctaccaac
ggcagcctcgctccgccgccgtccgcggccgcgcaggctcagccggtgcgcgcgcccgag
tggcgggcggacgggcgctcgctcagccccccgccgtccccgcctcgaccgccccggcgc
gcgacgcctccccctccacggcagcctcctcctcagccagagcctttccggcagcggagc
gccgggtacgcccggtacgcctacgacgatttctctgaggatgactcggatcgggagatg
gaccgcacctccgtctcgagtaggggtggatccactttagataatattgatgaatggaaa
tggaaactgcacatgcttcttcgtaacgaagatgagcaagaggttatctctagggaaaga
aaggacagacgtgattttgaacaactttcccaactggccgaacgaatgggtttgtacagc
cgtcagtattctaggattgttgtgtttagtaaggttccattgcctaattatagatcagac
cttgatgacaaaagaccacaaagagaggtgtctattccttctggattgcaaagagaagtt
gatgctttgctttcagattatcttgcacggaagagaacaagcagtgggagctttcctaat
gccgctttctcaaggtcaagtagcacagacagttttgcaactgacgaaagcttcttggag
cagcaagataatcagacttcaaccagtgctgtgatagagagaatacaaagaagaaaaagc
ctacagttgcgtaatcaacaggaatcatggcaggaatcacatgatggccaaagcatgatg
gaatttcgtcgcagtcttcctgcttataaagaaaggcaaacattattggaagctatagct
cagaatcaggttgttgtagtttcaggtgaaacaggatgtggtaagacaacacagctacct
cagtacattttagagtctgaaatagatgctgctcgtggtgccacttgcagtattatttgt
actcaaccaagacgaatatcagccatagctgtttctgaaagagttgctgctgaaagaggg
gaaaaaattggtgaatcggttggctacaaagttcggttggaagggatgaaaggacgggac
acacgccttcttttctgtactactggagttctgttgcggagattgctggtggatagaaat
ttgaaaggtgttacccatgttattgttgatgaaatccatgagcgtggcatgaatgaagat
tttcttcttattgtcctgaaggaccttcttccacgccggcctgagctaagacttgttttg
atgagtgcaacccttaacgctgagttattctcttcatactttggtggagctcccatgata
catatacctggtttcacttatcctgttcggagtcgatttctagaagatattctcgaaatt
actgggcacagattaactccttacaatcaaattgatgactatggtcaagagaaaagttgg
aagatgcaaaagcaagctctaaggaggaggaagagccaaattgcttcggttgtagaagat
acagttcaagctgctgatttaagggactacagtgcacgaactcgtgactcactatcctgt
tggaatcctgattcgattggttttaacttgatagaaaatgtcttatgccatatatgccaa
aaggaaagagctggcgcagttcttgtatttatgactgggtgggatgacatcaatgcactg
aaagagcagctgcaagcaaacccattgcttggagaccctagtaaagttttactgcttgca
tgtcatggttcaatggctagctcagagcagaaactaatatttgatagacctgagcctggt
gtaaggaaaattgttcttgcaaccaatttggctgaaacaagtattactatcaatgatgta
gtttttgtggttgattgtggcaaagcaaaagagacatcttatgatgcattgaacaacact
ccatgtttgcttccaacctggatctccaaggcttctgccagacagagacgaggaagagct
ggtcgagtccaaccaggggagtgttaccatctatatccacaatgcgtgtatgaagcattt
gctgactatcagttgccagaactcctgagaactcctctgcaatccctctgtttgcaaata
aaaagcttgcgccttgggagcatctctgaatttttatccagagctttgcaatcacctgag
tctctatcggtagaaaatgccattgaatatctcaaagtcattggagcgtttgatcgtaat
gaagagttaacaattctaggaaagcacttatccatgcttccagttgagcctaaattgggg
aagatgctgatttttggtgctatttttaattgccttgatcccatattaaccattgtttcg
ggacttagtgtgagagatccattcttgactccatttgacaagaaggatcttgcagagtct
gctaaattgcagttttcatgccgggactatagcgatcaccttgcacttgttcgtgcatac
gaaggatggagagaggctgaaagagatcgcaatggctatgactactgctggaaaaatttt
ctatccgtgcaaaccttgaaagccatagattcccttcggagacaatttctctttcttctc
agggatactgggttggttgatgaaaacatgactgcgtgcaataaatggagccgtgatgaa
aatctagttcgggcggtcatttgtgcaggattatatccaggtgtttcctctgttgtgaac
aaggagaaatcaatttctctcaagacaatggaggatgggcaagtcatgctttactcgagt
tcagtcaatggaaaagaaaccaagattcccttcccctggctggtgttcaatgagaaggtg
aaggtgaattctgtttttctccgggactcaacggctatatctgattctatactgttactc
tttggaggcaacataaaacaagggggcttggatggacatttgaaaatgcttggaggatat
cttgagttcttcatgagtcgtgatcttgcatcaacttacttgagtctcaagagtgaactt
gataatttaatccattgcaagctccaaaacccgaggatggacatccaaaccagtgaagag
cttctgtcagcgattagactgcttgtcactgaggatccatgcaacggccgtttcgtatat
ggtcgacaagagcaaagatcaaagaaagcaaagacaatgttctctgcagcccccatgagc
catggtggtggtggaaatggaggagacaatgctaagaaccagctccagacccttctcact
agggctgggcatgataacccatcctacaagacgaagcaaatcaagaacagcctcttcagg
tcgaccgtggagttcaatggcatgcagtttgtagggcagccgtgtgccaacaagaagctt
gcggagaaggatgctgcaggagaggcactgaactggctgacaggaggagctccctccgac
tcaagagatccccaagacatggatcacatgtccatgcttcagaaaccaccacgcaggaag
aggcatcatcataggaggggttga
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