Oryza glaberrima (African rice): 127754632
Help
Entry
127754632 CDS
T08853
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127754632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127754632
03036 Chromosome and associated proteins [BR:
ogl03036
]
127754632
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127754632
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127754632
PBAF complex
127754632
GBAF(ncBAF) complex
127754632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
127754632
NCBI-ProteinID:
XP_052136165
UniProt:
I1QY99
LinkDB
All DBs
Position
11:4096248..4103529
Genome browser
AA seq
786 aa
AA seq
DB search
MPRKASSTSDSRLKWRKRKRNPTASPSPSRRSSAAAAAADHSDDSDSAAVNEDDDSAVPE
DADDETLAGAEDPVLDLREAEVLPSAEPVSAFPVATRRVVNRPHPSVLAVIAAERSACAG
EGSAAVAAAVLENISYGQQQVLSGVLPDHASLATDTDKPSTYVCTPPNLMEGHGVTKQFQ
GRLHVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPEKYMLLRNKVIAKYLENPSKR
LAFAECQGLVANTAELYDLSRIVRFLDTWGIINYLASGSVHRGLRMATSLLREEPTGELQ
LLTAPLKSIDGLILFDRPKCSLQAEDISSLASNSEVVHFDAGLAELDEKIRERLSESSCS
YCLQPLTSLHYQSLKEADIALCSDCFHGARYITGHSSLDFQRVDGDSNRSENDGDSWTDQ
ETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDVFVPFRAE
TNGYPHSDCNGSTSGNLPQRIPPGNQLPFINSSNPVMSLVGFLASAIGPRVAASCASAAL
SDLTIDDDSRVNSEGICSDARGHGAHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKA
KLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRVR
IVSTRLASPGNSLPGGSTSTMSSNPMSMSPRPMGVPGSMPQSSMPAPFANNMQGHGHPQM
AFLQQQQQQQRQQMLSFGPRLPLSAIQTQPSPQTSNIMFNPGMPNSVTPNHHQLLRSSSG
NNSSVG
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggaaggcctcgtcgacctcagattcgcggctgaaatggcggaagcggaagcgg
aaccccaccgcgtccccgtcgccgtccaggcgctcgtccgccgccgccgccgcggcggac
cactccgacgactccgactccgccgccgttaacgaggacgacgactccgcggtccccgag
gacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcg
gaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgccgcgtcgtc
aaccggccgcacccgtccgtcctcgccgtcatcgcggccgagcgatccgcgtgtgcgggt
gagggttccgccgcggtggcggcggcggtgctggagaacatctcgtacgggcagcagcag
gtgctctccggggtgctccctgaccacgcttcgctcgcgacggacactgacaagccgtct
acctatgtgtgcacgccgccgaatcttatggaggggcatggcgtgaccaagcagttccag
ggccgcctacatgtcgtgcccaagcactcagattggttctccccagggatcgtgcacagg
ctggaaaggcaggtggtgccacagttcttttcagggaaatctccgggcaacactccggag
aagtacatgctattgaggaataaggttattgcaaaatatttagagaacccaagcaagagg
cttgcttttgcagagtgtcaagggcttgttgcgaacacagctgaattatatgatctcagt
aggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctgggtcggtg
caccggggtctaaggatggcaacatcgcttctaagggaggagccaaccggggagttgcaa
ctattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaatgt
agcctccaagcagaggacatttcttcattggcatcaaattcggaggtggtacattttgat
gctgggcttgcagaattggatgaaaagattagggagcgattatcagagagttcttgcagt
tattgcttacagcctttgaccagtttgcactatcagtcactaaaggaggcagatatcgct
ctatgctctgattgcttccatggcgcgagatatattactgggcattcaagcttagatttt
cagagggttgatggggatagcaatagatcagaaaatgacggggacagttggactgatcaa
gaaacgttattgctgttggagggcatagagaagtacaatgacaactggaataacattgca
gagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcctgtt
gaagatggtttattagagaacattgaggtgccagatgtgtttgtgccatttagagcagaa
accaatggatacccacattcagattgcaatggcagtacttcaggaaatctacctcaaaga
attccacctggaaaccagcttccgttcattaattcttctaatccggtgatgtcactggtt
gggtttttggcttctgctataggaccaagagttgcagcatcatgtgcaagtgccgcttta
tcagatttgacaatagatgatgattccagggtgaattcagaaggcatttgctctgatgct
aggggccatggtgcacatccgaattttcgtgatcataatggtggtgtatcttcatccatc
tctccagaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaaggct
aaactttttgcggatcaagaggaacgtgaaatccaaagactaactgctactgtaataaac
catcagttaaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttgctt
ttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtccga
atcgtgtcaacccgcttggcctcgcctggaaatagcctacctgggggtagtactagcacc
atgtcatccaatccaatgagtatgagccccagaccgatgggcgtgccaggctcgatgcct
caatccagtatgccagcaccatttgccaataacatgcaggggcatggccacccccagatg
gcattcttacagcagcagcagcagcagcagcggcagcagatgctgtcattcggacctcgc
ctgccgctgtcggccatccaaacccagccatccccacagacgtcaaacatcatgttcaac
ccaggcatgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctgga
aacaattcaagtgtaggatag
DBGET
integrated database retrieval system
