KEGG   Oryza glaberrima (African rice): 127756605
Entry
127756605         CDS       T08853                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03030  DNA replication
ogl03410  Base excision repair
ogl03420  Nucleotide excision repair
ogl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127756605
   03410 Base excision repair
    127756605
   03420 Nucleotide excision repair
    127756605
   03430 Mismatch repair
    127756605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ogl03032]
    127756605
   03036 Chromosome and associated proteins [BR:ogl03036]
    127756605
   03400 DNA repair and recombination proteins [BR:ogl03400]
    127756605
DNA replication proteins [BR:ogl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127756605
  DNA Replication Termination Factors
   ELG1-RFC complex
    127756605
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127756605
DNA repair and recombination proteins [BR:ogl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127756605
  Check point factors
   HRAD17(Rad24)-RFC complex
    127756605
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 RuvB_N Mg_chelatase AAA_assoc_2 AAA_14 AAA_11 AAA_5 AAA_16 AAA_24 ResIII SLFN-g3_helicase AAA_2 nSTAND3 PhoH DNAX_ATPase_lid AAA_25 AAA_30 AAA_19 AAA_23 IstB_IS21 AAA_7 AAA_28 RNA_helicase bpMoxR Cdc6_lid DUF3853 Parvo_NS1
Other DBs
NCBI-GeneID: 127756605
NCBI-ProteinID: XP_052137916
LinkDB
Position
12:3847141..3851214
AA seq 339 aa
MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN
RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIP
EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK
KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtg
aaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgcc
gaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgctt
gccattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaat
gctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgtt
gctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatacta
gatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagact
tactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaacca
cttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaat
cgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctaca
ctaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgct
cgcttatttggatcttctatttcttctactgacttgattagtgtttcaggggctatccct
gaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaac
aaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagttt
ctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaa
aagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttg
gatgtggctagtgagactatccgcgctctttttgacatgccacaaacgctggtcttctaa

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