Oryza glaberrima (African rice): 127757339
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Entry
127757339 CDS
T08853
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127757339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127757339
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127757339
mRNA degradation factors
5'-3' decay
Decapping complex
127757339
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DCP1
CdiI_2
Motif
Other DBs
NCBI-GeneID:
127757339
NCBI-ProteinID:
XP_052138807
UniProt:
I1R476
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Position
12:2794580..2798799
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AA seq
374 aa
AA seq
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MRPPAPATTAGAGGKVTPNLAMDAEGTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIE
LNQWSRKDVEGSLFVVKRNKQPRFQFIVMNRRNTDNLVEDLLSDFEFELQPPYLLYRNAA
QEVNGIWFYNQQDCDAVAGVFGRILNAYAKVPPKPKVPSTKSEFEELEAVPTSAAIDGPL
EPSPSSTVLVSNAPDESLTDYFSGAVNVGNVSITPMVGRTHQPIESVASSHVPLIIPSAA
PTHQMGVPSGAASAPPLPVIDTNVHSSHSTNLVTPAFFAPPSSSSASLVAPASSFMPTAS
PFHPTSADAHRPAYGHGTPLLQPFPPPTPPASLTPVHNDEPVISRDKVKDALLRLVQNDE
FINLLYQELQNAHA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgcggccgccggcgccggcgacgacggcaggcgcgggggggaaggtgacgccgaacctg
gcgatggacgcggaggggacgcggctgctcaacctcaccgtgctgcagcgcctcgacccc
gccgtcgaggacatcctcatcaccgccgcccacgtcacgctctacgacttcaacatcgag
ctcaaccagtggagccggaaggacgtcgagggatcgctgttcgtggtgaagaggaacaag
cagccgaggttccagttcatcgtcatgaacaggcgtaacaccgataatctcgtggaggat
ctattgagtgactttgaatttgaacttcagcctccgtatttgttataccgaaatgctgca
caagaagtaaacggtatttggttttataaccaacaagactgtgatgctgttgcaggtgtt
tttggaaggatattgaatgcttacgccaaagtgcctccaaagcccaaagtaccttccaca
aaaagtgagtttgaggaattggaagctgttcctacatccgctgctatagatggccccctt
gaaccttctccgtcgtccactgttctagtttctaatgcccctgatgaatcattgactgat
tatttcagtggcgctgttaatgttgggaatgtatcaattacaccaatggttggaagaact
catcagcctatcgagtctgttgcatcctcacacgtaccattgatcatcccatctgctgct
cctacacatcaaatgggtgttccttcaggggctgcgtcagctccaccactgcccgtcatt
gacactaacgttcattctagccactcaacaaatcttgtaactccagccttttttgcacct
ccctcatcgtcttctgcatcattggtggcaccagcttcatcctttatgcccacagcatca
ccttttcatccaacttctgccgatgctcaccgtccagcatatggacatggtacacccctt
cttcaaccctttccgccgccaacaccacctgcatcacttacccctgtacacaacgatgag
cctgttatttcgagggataaagttaaagatgctctcctgaggcttgttcagaacgacgaa
ttcatcaatttgctctatcaggagttacagaatgcacatgcgtag
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