Oryza glaberrima (African rice): 127760221
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Entry
127760221 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127760221 isoform X1
KO
K24155
rabconnectin-3a
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
127760221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogl04131
]
127760221
Membrane trafficking [BR:
ogl04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
127760221
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
127760221
RAVE complex
127760221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WDR55
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WD40_Gbeta
PHD_4
MJ1010-like_2nd
Motif
Other DBs
NCBI-GeneID:
127760221
NCBI-ProteinID:
XP_052140398
LinkDB
All DBs
Position
1:complement(18850250..18863247)
Genome browser
AA seq
2456 aa
AA seq
DB search
MGEPDELPPLPLALHPPHLIPPAPAADPRALSFLPDLGGLPWVAYGAASFLVVSHLPSPP
REGSSSGGGGGGGDDGPFFRQAIDLRAPVSAVSWCRRGGGELAAAAGSSVSVFQPAPSSS
PGSFGWVLRWAITETFAVAAVAWTGSGDGILLAGEGVAMWARAESSWQLAWRCSPQVAQS
LASATHLLQGPVATAAAAPSSEGSVPPVLVIVNDAKVGVEKVELAHPKPVSMIQWRPRSL
FVSDQSEVRREILMTCCLDGTLRLWSEDEAAKSKKHRVLQRSFSVIAVIEMSNTLNGVLG
VDITVKWAIETGSVVSRDEDGNFTLFSGDPGHNQVGKCEWLVSAGPEASVNFWAVHCIDD
VSPPRYPRITLWKQVKLQSQTQSASGQQKSIDDSFFVEAVISRGLSSGPPTTCSLLHLLH
DNSFIWSRLSSNLSLNSGGHALSDSAKSLSCYSSQTINQHGHNGSIKQVSVHPYSCEIEL
AVSMDSSRTLHFWSLSTLSTLISTLHAPTYPLWKLLCKFDLCDIQADVEYSCLCWAPSVI
QQNRFLVLGSEKGADCFVVSIQNEGDILSCQKMFTIPFFEGSNAEGPPDSIHTIPLASNC
DGPFVNNSFVVVCLWRTSFQALSWKVVLHLENQNKCGMCLCGFSASSLSTADQGRHGTYL
NADMFSAVICKGSSVFPTCLDGEYPTCISATPLNNTVLSLQQHGSGTASCYHIATGYSDG
TVKLWKMSFADNPLHTEKESHIWQLVGTFGADRGPITAISLSNCGRIATVVRNVQKNTTY
IHIWKAVKLMGDGSFLLEDALTLQGPVVGLDWLSLGDGRFLLAVYLLNELHIYSHKHPSF
KNVLHTVNSKEKHLWSCIALSHSPHDIASFLWGPKATGVLVHKNHLALFSSWLVRANESS
THICDCPAADIHELPCTKHFNEDIFGRFSLSENYSNTMLLQKHSAHCSNDLWNLLDIAAK
MSGPLASYHPRALIQSLYSGQWKRANTVLQHLVQSMQANKISNALLECSFCGKSCHNIPE
CPLSESFTDMTSNDISNRGFLWGDNQRSTAFSLLSPSNSYPRMEDINTTTSTSQSSEINK
LLAMNVSISTISDMERTQIVALSDLLGKITDQSHASPYKSLDEAGRRFWVAVQFERLYAL
RRSEDPSSAEVFHVDSASIAWALQSDCQDDLLNSVLPAEPSWFEMRNLGMGLWYTNVSQL
RTRMEKLARLQYLKSKDPKDCALLYIALNRTKVLVGLFKISRDEKDKRLYEFLSRNFQEE
KHKSAALKNAYVLMGRHQWELAIAFFLLGGDTSSAISVCAKNLQDEQLAIVICRLLEGSG
GPLERNLIANVLLPEAVDKGDHWLSSLLEWMLGNYSQSVNQLLDCHLKSLIEESSIPGDT
NVFADPGVGQYCAIIATKSSFRNCVGEAQSANLSKLSLAMASCALNRCGLPLEALEYLCC
NSGIEGKDNTSLDGGDKKIVYGILNPFHASSNWLSASVVSDVESNLKITMASKYLSRMLR
NQSLCSRCGLPLTKDKVLKEFNSNHVNELSRDVKAALQVFDKKFSLQVADIAEKILTFCC
NDGILFLAYVLLWGSISSDVGTGTCGLEGCAFHPIDYMFMVSSKESCKFLTQYVVSCCFI
CSTLNMDCANTTPCTMKVGKYIMASLSHFLSTSRLLLKQDKTRTFVLGRTSAMLTVMDLL
EYNMEFSFSWLCHDIKALLTMTSPVIGVCVNRESFQVLLDQLLQAVHDKIHGVSIGTDGG
TVNGLLCNIQQEKSENQSLPIDEKWHLIGISLWTRLSSFMKQFLTEFVEKERIELETSAS
DVEFKDLISSVVAKFLMGSLHFVSSLLVKLHASFFREKVLKKLNSSVLFWLSQPRSNNNS
HEQFSSIFQLANSENIEVFFDTLWEISAHPVDICTAFVDEEVNCFPLNSISLTRSWKAMT
EATLVESENNFAQRSEENRDNFSSKNDEKIQRSIDNTPYGVEVTFEPKRKGLIADFERPR
ELVRRNGELLEAICLNSINEQQGAIATNRKGLVFFNWNDQQHNKNLAEYIWAGSDWPLDG
WAGCESTPTSTSFSPSVGLGRRKGSHLSSGGPTISLGSLAKPGRDLTGGGAFGIPGYAGI
GASGFGWGEPEEFEDFVDPPATLENIHSRALSRHPSLPLLLVGSSNTHVYLWEFGKESAM
ATYGVLPAANIPPPYALASISAVQFDYYGQRFATAALDGTVCTWQVEVGGRSNVHPTESS
LCFNTHASDVAFLTASGSVLAAAGCSSNGANVVIWDTLAPPSTCQTSIMCHEGGVRSLSV
FDRNIGCGSISPLIVTGGKSGDVTLHDFRFISTGKTKHHRSSNEHDVKASSTSMHDTKSG
TSNGVSNSGMIWHIPKAHTGSVSSVSTIPNTSLFLTGSKDGDVKLWDAKSSQLVFHWQKL
HERHTFFQPTSRGFGGVVRAAVTDIQVLPNGFVSCGGDGSVKLVQVKNDFADVRPH
NT seq
7371 nt
NT seq
+upstream
nt +downstream
nt
atgggggagccggacgagctgccgccgctgccgctcgccctccacccaccgcatctcatc
ccgccggcgcccgccgccgacccccgcgccctctccttcctccccgacctcggcggcctc
ccctgggtcgcctacggcgccgcctccttcctcgtcgtctcccacctcccctcccctccc
cgcgagggaagcagcagcggcggcggcggtggcggtggcgacgatggcccgttcttccgc
caggccatcgacctccgtgcccccgtgtccgccgtctcctggtgccgacgtggcgggggc
gagctcgccgccgccgccgggagctccgtgtccgtgttccagccggcgccgtcctcttcc
ccaggatcgtttggttgggtgctgagatgggctatcaccgagactttcgctgtcgccgcc
gtggcctggacgggctccggcgacggcattctgttggccggcgagggcgttgccatgtgg
gctagggcagaatcctcttggcagctcgcttggaggtgctcacctcaggtggctcagtcc
cttgcctctgctacacacttgctccagggccccgtcgcgacagcggccgctgctccttca
tccgagggcagcgtgcctcctgttctggtgatcgtgaatgatgccaaggtgggtgtggag
aaagtcgagcttgcgcatcctaaaccagtatccatgatccagtggagacctaggtcgttg
tttgtcagtgatcagtctgaagtgaggcgagagatactcatgacgtgctgcttggacggg
actctccggctgtggagcgaggatgaggcagccaagtcaaagaagcatcgggttttgcaa
aggtccttcagtgtcattgcggtaattgagatgagcaacactctgaatggagtgctggga
gttgatataactgtgaaatgggcgattgaaactggcagtgttgtatcgagagatgaagat
ggcaatttcacattgttttcaggtgaccctgggcacaaccaggtaggcaaatgcgagtgg
ttagtaagtgctggccctgaggcttctgtaaacttttgggccgtccattgtatcgatgat
gtatctccaccaaggtatccacggattactctatggaaacaagtcaaactgcagagtcag
acgcagtctgcttcaggacaacaaaaatccatagatgactcgttttttgttgaggctgtt
atatcaagagggctatcttctggcccacctacaacatgttctttgcttcatttgctgcat
gataattcatttatttggtctcgcttatcctccaatttatcattgaattctggggggcat
gctttgagtgattctgctaaaagtttgtcatgctattcatcccaaactatcaatcaacat
gggcataacggtagcatcaaacaggtgtctgtccatccatacagctgtgaaatagagcta
gctgtttccatggattctagcagaactctacatttctggtctctttcaaccttatcaact
ctcatatcaactttgcatgcacctacttatccattatggaagcttttgtgcaaatttgat
ctgtgtgacattcaggcagatgtggaatactcatgtctgtgttgggctccttctgttatt
caacaaaataggtttcttgtccttggaagtgaaaaaggagccgattgttttgtagtcagt
attcagaacgaaggggatattctttcatgtcagaaaatgttcacaattcctttctttgaa
ggtagtaatgcagaaggcccacctgacagcattcataccatacctttagcttctaattgc
gatgggccttttgtcaacaacagctttgtagttgtatgtctatggaggacgagttttcaa
gcattatcatggaaagtagtcctacatctagaaaatcaaaacaaatgtgggatgtgtttg
tgtggtttttctgctagctctctttctactgcagatcaagggagacatggaacctacctt
aatgctgatatgttttcagcagttatttgtaaaggttcttcagtcttccctacatgcctg
gatggagaatatcctacatgtatttctgcaacgccactgaacaatactgtattatctcta
cagcagcatggttcaggaactgcttcatgttatcacattgctactgggtattctgatggc
actgtgaaactgtggaagatgtcttttgcagataaccctttgcatactgagaaagagagc
cacatctggcaactagtaggcacgtttggtgccgatcgaggaccaattactgcaatttca
ctgtccaattgtggtagaattgctactgttgttagaaatgttcagaagaataccacctac
attcatatctggaaagcagtaaaactcatgggagatgggagttttctcctggaggatgca
ctaacgcttcaaggtcctgttgttggtttggattggctatctttaggcgatgggagattt
ttacttgcagtctaccttctcaatgagttgcacatatattctcataagcacccttccttt
aagaatgtattacacactgtgaattcaaaagagaagcatctttggagctgtattgcacta
tcccattctccacatgacattgctagcttcctttgggggccaaaggcaactggtgtgctt
gttcataagaatcatcttgcactcttcagttcatggttagtaagagccaatgaatctagt
acccatatatgtgattgtccagctgcagacatacatgaattgccttgtactaagcatttt
aatgaagatatctttggtagattcagtttatcagaaaattacagcaacacaatgttacta
cagaaacacagtgctcactgttctaatgatctatggaacttgttggatatagctgccaaa
atgagtggacctctggcatcatatcacccgagagcacttattcagtctctttattcaggt
caatggaaacgggcaaacactgttctgcagcatcttgttcaatccatgcaagcaaataaa
atatcaaatgccttgttggagtgcagtttctgtggtaaatcatgccataatattcctgaa
tgccctttgtctgaaagcttcaccgatatgacatctaatgacatatctaatagagggttt
ctttggggtgacaatcaacgtagcacagcctttagtttgctatcaccatcaaattcatat
cctcggatggaggatatcaacaccaccactagtacatctcaaagttcagaaataaataag
ctccttgctatgaatgttagcatatctacaataagtgacatggagagaacccagatagtt
gcactttctgatcttttgggtaaaattactgatcagagccatgcatctccctataaaagc
cttgatgaagcagggagaaggttctgggttgctgtgcagttcgaacgcctatatgcactt
aggagatctgaagatccatccagtgccgaagtcttccatgttgattctgcttctatcgcg
tgggccttacaatctgattgtcaggatgatctacttaattctgttcttcctgcagaacca
agttggtttgagatgcgaaaccttggtatggggttatggtacaccaacgtgtcccagtta
agaaccaggatggagaagttggcaaggctgcaatatcttaaaagcaaggacccaaaggac
tgtgctcttctctatatagcattaaatagaacaaaagtattagttggcctattcaagatt
agcagagatgaaaaggataaacgtctctatgagtttctctccaggaacttccaggaagaa
aaacacaaatctgctgctctaaaaaatgcatatgtgctaatgggaaggcatcaatgggag
cttgctatagcatttttcctccttggaggtgatacatcctcagccatcagcgtttgtgca
aagaaccttcaagatgaacaacttgctattgtaatttgtcgacttcttgagggatctgga
gggcccttggagcgtaatctcattgctaatgtgctgctccctgaagcagttgataaagga
gaccactggctttcaagcctacttgaatggatgttagggaactactctcagtctgtgaat
caattacttgattgccacctcaagtcactgattgaagaatccagcattcccggtgataca
aatgtctttgcagaccctggagtgggtcagtattgtgcaatcattgcgacaaaaagtagt
ttcagaaactgtgttggtgaagctcaatctgcaaatttatctaagctttcattagcaatg
gcttcatgcgccttgaacagatgtggactgcctcttgaagcacttgaatacctatgttgt
aactcgggcatagagggaaaggacaacacctcactggatggcggagacaagaagattgtt
tatggaatattgaaccctttccatgcttcgtccaactggctctcagcatctgtagtcagt
gatgttgaatcaaacctgaaaataactatggcttcaaaatatctgtcgcgcatgctgaga
aatcagtcactctgttcacggtgcggcctaccactaactaaagataaggtcctgaaagaa
ttcaacagtaatcacgtgaatgaactttcacgtgatgtcaaggcagcgctacaagtattc
gataaaaaattctcacttcaagttgctgatatagctgagaagatccttaccttttgttgc
aacgatggtatactttttctcgcgtatgtgttgttatggggtagtatatcatcagatgtt
ggaactggtacttgtggtcttgaaggttgtgctttccatccaattgattatatgtttatg
gtgtcaagtaaggagagctgcaagtttcttacacaatatgttgtctcctgctgcttcata
tgttctactctgaacatggactgcgctaatactactccatgcacaatgaaagtgggcaag
tacattatggcaagtttatcacacttcctgagtactagcaggttacttctgaaacaagac
aagactagaacttttgtgttaggtcgtacatcagctatgcttacagttatggacctcctt
gaatacaacatggagttttccttttcttggttatgtcatgacataaaagcattgcttacc
atgaccagtccagttataggtgtttgtgtcaacagagagtcctttcaagtactattagat
cagttgctgcaagctgtacatgataaaattcatggtgtatcaattggcacagatgggggc
acagtcaatggtttgttgtgtaatatacaacaagaaaaaagtgagaatcagagtcttcca
attgatgaaaaatggcatttgataggtatttctttgtggactcgattgtcatctttcatg
aaacagtttttgactgagttcgttgaaaaagagagaattgaacttgaaactagtgcaagt
gatgtggaattcaaggacctcatatcttcagttgttgcaaagtttttgatgggctccctc
cattttgtgtcatctttgttagtaaaattgcatgcttcatttttcagagagaaagtactg
aagaagttaaattcaagtgtgcttttctggttatctcagccaaggtccaacaacaatagc
catgagcagttctcgagtatttttcagcttgctaacagtgagaacatcgaagtctttttt
gatactttgtgggaaatatctgctcatcctgtggatatctgcactgcttttgtggatgaa
gaagtgaattgctttcctttaaacagcattagtttaacacgatcctggaaggctatgaca
gaagctacattagttgagtctgaaaataattttgctcaaagaagtgaagaaaatcgtgac
aattttagttccaagaacgatgagaaaatacagagatcaattgacaataccccttatggt
gtggaagtcacttttgaacctaaaaggaaaggtttaattgcagattttgaaagacccaga
gaacttgtaaggagaaatggtgaacttcttgaggcaatatgtctcaactctatcaatgag
caacaaggtgctatcgccaccaatcggaagggccttgttttcttcaactggaatgaccag
caacataacaaaaatttagcagagtatatatgggcaggatctgattggcccttggatggg
tgggctggttgcgaatctacacctacttcaacttctttttctcctagtgttggtcttggc
agaagaaaaggatcccatcttagttcaggtggaccaactattagtttaggttcattggca
aaacctggaagggacttaactggtggtggagcatttggaattccaggttatgctggtatc
ggcgcatctggatttgggtggggggaacctgaagaatttgaggatttcgttgatcctcca
gcaacactcgagaacatccattcaagagcattgtctcgccacccatctttgccattgttg
ctagttgggtcaagcaatactcatgtttatttatgggagtttggcaaagaaagtgccatg
gctacctatggtgttctccctgctgctaatatcccaccaccttatgcccttgcttccata
tcagctgttcaatttgattattatgggcaacggtttgctactgctgcattagatggtaca
gtttgtacatggcaagttgaggtgggtggaagaagcaatgtccatcctaccgagtcatcc
ctgtgctttaacacccacgcatcggatgtcgcatttctgactgcaagtggatcagttctt
gctgcagctggatgcagttcaaatggtgcaaatgttgttatttgggatacattggcgcca
ccatccacttgtcaaacttctattatgtgtcatgaaggaggagttcgttctctttctgtg
tttgatagaaatataggctgtggatctatctcaccgctgattgtaactggtgggaaaagt
ggagatgtaactttgcatgattttcggttcatctctactggaaagactaagcatcacaga
agttccaacgaacatgatgttaaggcatcttcaacttcaatgcatgacactaagtctgga
acttccaacggtgttagcaacagtgggatgatctggcatataccaaaggcacatacaggt
agtgtcagcagtgtatcaaccatcccaaataccagtttgttcttaactggaagcaaagat
ggagatgtgaaactttgggatgccaaaagttctcagctagtcttccattggcaaaagttg
cacgagcggcacaccttttttcaaccaacttctaggggctttggtggtgttgttagggct
gctgtaacagacatccaagtcttacctaatggttttgtctcatgcggtggggatggttct
gtgaaacttgtgcaggtaaaaaatgattttgcagatgtacgcccgcattag
DBGET
integrated database retrieval system
