Oryza glaberrima (African rice): 127760606
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Entry
127760606 CDS
T08853
Name
(RefSeq) tRNase Z TRZ3, mitochondrial-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ogl03016
]
127760606
Enzymes [BR:
ogl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
127760606
Transfer RNA biogenesis [BR:
ogl03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
127760606
Prokaryotic type
127760606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
TVHS-like
YadA_stalk
Motif
Other DBs
NCBI-GeneID:
127760606
NCBI-ProteinID:
XP_052140847
LinkDB
All DBs
Position
1:6663875..6677991
Genome browser
AA seq
1586 aa
AA seq
DB search
MPQLPSPLRRLLPLSQTLAAATPAPLLHLSRRLFSSSSSSSPSPSPRAACLRALAYRGGQ
AGGGGRRGHHNHLLRRGNSTLGKRSKEKMGGGGGGGGGGGEAEVAFNKTRAEGKDGRKGR
SMELKSRKLNPINTICYVQILGTGMDTQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKI
KLSKIDHIFLTRVCSETAGGLPGLVLTLAGIGEEGMSVNIWGPSDLDFLASAMRSFIPNR
AMLHTHSFGVEQNVSSSQSKDATVIVDDEVVRISAMFVKPRYNKEASCLNDSNLKPGDTA
IIYACELPELKGKFDPAKAAALGLKPGPKYRELQLGNSVQSDAFDKMVHPSDVLGPSIPG
PTVLLVDCPTKYHMHELFSLQSLIRFYEDSSEQAGSPKKVNCVIHLGPSSVTEALDYQNW
MRKFGATQHIMAGHEIKNMEIPILKGSARISSRLHFVCPHLFPSSGFWPVEPINDVDSEK
NKVSSLQACESVSAANLLKFHLRPYAQLGLDRSSIPSLTTYGDIVDELLSEIPEIKEVPE
QISKFWQSNSVGKHMLMVEEPWITENSSVCNFVDENSNSGKLQDGTPLRASGWRKHPKDT
PDIPCCVENATREDMEITFLGTGSSQPSKYRNVSSIYINLFTQGGILLDCGEGTLGQLKR
RFGVSGADDAVKSLKCIWISHIHADHHTGVARVLALRSKLLKGVPHKPLLVIGPRPLERF
LNAYSTLEDLDMQFLDCRQTLKPSIEAFLSGNATESATSQLGSTIFAPGSKMENYSRKPA
SPRDTTALTNLKDVLHESGLEVLYSVPVLHCPQAFGVVLRAKEKVSSAGKAIPGWKVVYS
GDTRPCPALVDASRDATVLIHEATFEDSMKDEAIARNHSTTKEAIAVGTSAGAYRIILTH
FSQRYPKIPVFDEVDMQKTCIAFDLMSVNLADLPVLPKVLPHLKLLFKDEMVVDESDEIQ
EAALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHYKGHPDPLKGDSLNKAVRETANDAIA
AIFSTEEPKPAVATEGLGKRIQGFGNTNFEPSRDDKKSFLSELSEVVGIGSASIKQGLSN
FAASHSSMITNDNGGPYKSPNLRRSLTTETDKYGRYDPSEIQGESRSSSGASKNVSSGSW
GPSPSSSAPTDDTGSSQTGVKTREERLLDTIATSSGVRLQPTRDALQIFLTEAAKLDAVA
LSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIITSYFCENSASVVRCCELPQVS
LREKASKVLNLLVGEQPTGSNNFSETKTTVPAAQMPDLIDTGDQDDPGAQNSAQEGSERI
MGNSTFTSSVDDFLGGEPIADISTTTSNGNGGDPFADVSFHETADTKDTNDLFSGMTVEE
KATAALHDSSSINKNELPDIFGSSPEPFFQERVEDKGTVNDLMAGLNLNGTAQAQPGIKT
ESNNTVNVSQLFDMNSQTTNVANSAAMTGILGQSFYQQQQVPLQYNLPSQMLLNPAFAGQ
QLNYGAMSVLLAQQQQLLQNLGNFNAGLGHSSLNAMNSGNASVLPDIFNSSNQPQHVAVM
SNSKKDETKAFDFVSDHLAAARGSKK
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaactgccctcccctctccgccgcctcctcccgctctcccaaaccctagccgcc
gccaccccggccccgctcctccacctctcccgccgcctcttctcctcctcctcctcctcc
tccccctccccctcccctcgcgccgcgtgcctccgcgccctcgcctaccgcggcggccag
gcaggaggaggaggtcgccgcggccaccacaaccacctcctccgacgcgggaacagcacg
ctcgggaagaggagcaaggagaagatgggcggcggaggagggggagggggagggggaggg
gaggcggaggtggcgttcaacaagacgcgcgcggaggggaaggacgggaggaagggcagg
agcatggagctcaagagccgcaagctcaaccccatcaacaccatctgctacgtacagata
cttggtacaggaatggacacacaagatacttcaccttccattttactcttctttgacaaa
cagaggtttatatttaatgctggcgagggtcttcagcgtttctgtactgaacacaagata
aagttatcaaagattgaccacatatttttgactcgtgtatgctcagaaactgcagggggc
cttccaggactggttctgactctggcaggcataggagaagagggcatgtcggtgaatata
tggggcccttctgacctagattttttagctagtgcaatgagatcctttatcccaaataga
gcaatgcttcacacacatagctttggtgtggaacaaaatgtatcttcttcccaatctaaa
gatgctactgtcattgttgatgatgaagtagttcgaatatccgcaatgtttgtcaaaccc
agatacaataaagaagccagttgcttgaatgactccaacttgaagcctggcgatactgct
atcatttatgcatgtgaactgccagaacttaaaggaaagtttgaccctgctaaggctgct
gcccttggtctcaagcctggaccaaaatatcgtgaacttcagctcgggaactctgtgcag
tctgatgcattcgataaaatggttcatccaagtgatgttcttggcccgtcgattcctgga
cctactgtacttttggtggattgccctacaaaatatcatatgcacgaactattttccctg
caatctcttatacgcttttatgaagattcttctgagcaagcagggagtcccaagaaagta
aattgtgtaatccacttgggcccatcttctgtgactgaagctctcgattatcagaactgg
atgagaaaatttggtgccacacagcatatcatggcagggcatgaaattaaaaacatggaa
attcctatcctgaagggtagtgcaaggatatcatcacgtcttcattttgtatgccctcat
ctcttcccatcctctggattttggcctgtggaacctataaatgatgttgattcagagaag
aataaggtttcttcattgcaagcctgtgaaagtgtgtcagcggctaatcttctaaagttt
catctgcgtccatatgctcaactggggctggacagatcgtctataccaagccttactact
tatggagatattgtagatgagctcttgtcggagatcccagagattaaagaagttcctgaa
cagattagcaagttctggcaaagtaattcagttggcaagcatatgctcatggttgaagaa
ccatggattactgagaattcctctgtttgtaattttgtagacgaaaatagtaattcaggc
aagttacaagatggcactccattgagagcaagtggctggagaaagcacccaaaggacact
cctgatatcccttgctgtgtggagaatgcaacaagagaagatatggaaattacctttttg
ggtacaggttcatcccaaccttcaaaatatcggaacgtaagttccatatatattaacctg
tttacacaaggaggtatacttcttgattgcggtgaaggaaccttagggcaattgaaaaga
aggtttggtgtaagtggtgctgatgatgctgtgaaaagtttgaagtgtatttggatttcc
catattcatgctgatcaccacacaggtgtagctagagttcttgctttgaggtctaaattg
ttaaaaggggtacctcacaagcccttacttgttattggaccaagaccacttgaaagattt
ctaaatgcatattcaacactcgaagatcttgatatgcagttcctagactgcaggcagact
ttaaagcctagtatagaggcttttctcagtggcaatgctactgaatctgccacatctcaa
cttggaagcactatatttgctcctggaagtaaaatggagaactacagccggaagcctgca
agtccaagagatactacagctctaactaatttgaaagatgtcctacatgaatcaggtttg
gaagttctttacagtgtcccagttctgcactgtccacaggcgtttggagttgttctgaga
gccaaggagaaggtgagcagtgctggaaaagctattccaggatggaaggttgtttattca
ggtgacacgaggccctgcccagctcttgtagatgcgtccagagatgccactgtactaata
catgaggcaacatttgaggacagtatgaaggatgaggcgatcgcgaggaaccatagtaca
acaaaggaggccatagcagtaggcacatcagccggagcataccgtataatcttgacccac
tttagccaaagataccctaaaatcccagtttttgatgaggttgatatgcaaaagacttgc
attgcgttcgacctgatgagtgtgaatctggcggacttgccagtactgccaaaggttctt
cctcacctgaagctcttgttcaaagatgagatggtggttgacgaatctgatgagatccag
gaggctgctttgcggttgattaaatatgctgttgggaagtctggtactgatttcaagcgg
gaaatgcaacggcactcagcagctatgcgccagcttgttcactacaagggacaccctgac
cccttgaaaggggattctcttaataaggctgtccgtgaaactgcaaatgatgccattgct
gctattttctccacagaggaacctaaacctgctgttgcaacagaaggtcttggcaagcgc
atacagggttttggaaatactaattttgagccatcaagagatgacaaaaaatctttcctt
agtgagctaagtgaagtagtgggcattggcagtgcttccattaaacagggtttgagcaac
tttgctgcttctcattcatcaatgataacaaatgataatggtggtccgtacaagagccca
aaccttcgtaggtctctgaccacagaaacggataaatatggcaggtatgatccaagtgaa
attcaaggcgagagccgttcttcatctggtgcttcaaagaatgttagttctggttcatgg
ggtcctagtccatccagttctgcaccaactgatgatactggttcaagtcaaacaggggtt
aagactcgtgaagagagacttttagatacaattgcaacttcaagtggtgtgcggttgcaa
ccaactcgagatgctctgcaaatatttctaacagaagctgccaaattggacgcagttgct
ttgagccgtgcccttgagaacaaattgaattctcctttatggcaggttcgcatgaaggca
atttgtgtattggaagcaattgtaaggaaacaggatactgatccttattcaatcattact
tcatatttctgtgagaacagtgcatctgttgttagatgctgtgagcttccgcaggtttct
ctcagagaaaaggcttcgaaggtcttaaatctgctggttggggaacaacctactggaagc
aataatttttcagaaacaaagacaacagtacctgctgcacagatgcctgatttgattgat
acaggggatcaagatgacccaggagctcaaaattcagctcaggaaggtagtgagaggata
atggggaatagcacgtttacttcttcggttgatgattttctgggtggtgaacctattgct
gatataagtaccaccaccagtaatggtaatggaggtgatccatttgcagacgtttcattc
catgagacagcagatactaaggatactaacgacctattctcggggatgacggtagaagaa
aaggcaacagcagccttgcatgatagctcatcaataaacaaaaatgaattgccagatata
tttggcagcagccctgagccattcttccaagaaagagtagaggataaaggaaccgtgaat
gatttgatggctggtttgaaccttaatggaactgcccaagctcagcctgggattaaaaca
gaatctaacaatactgtcaatgtttcacagctctttgacatgaacagtcagacaacaaat
gtggctaattctgcagcaatgactggtattcttggccaaagcttttatcagcaacagcag
gttcccttgcagtacaacttgccatcacagatgctgttaaatccagcatttgctgggcag
caattaaactatggtgctatgagtgttcttcttgctcagcagcagcagctgctgcaaaat
ctaggaaatttcaatgctgggttgggacattcgtctttgaatgcaatgaacagcggaaat
gcatctgtgcttcctgatatcttcaattcaagtaaccaacctcaacatgttgctgtgatg
agcaactcaaagaaggatgaaactaaagcttttgattttgtttcggatcatcttgcagca
gctcgtggttcaaaaaagtaa
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