Oryza glaberrima (African rice): 127761144
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Entry
127761144 CDS
T08853
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127761144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127761144
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127761144
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127761144
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
127761144
NCBI-ProteinID:
XP_052141337
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Position
2:complement(31913159..31922433)
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AA seq
622 aa
AA seq
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MSGLLNSNLNNSASNLQDSTGRPFTGSFSGQSGSVPGGFHHSGLHNMHGSLNMPNMPGSF
SQRNAAMSGLPSSGVQQPGGSMPGRFASNNLPVGMSQIPHGHSGVGSRGLNVGGGPAFSS
SLNIGGTIQGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGNIVGGSNIGRNISSG
GLSVPSIASRMNLSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMMGSSYPTSGGSLSQN
QIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGNTTDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPQNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQAQNPFRLQ
QVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGLNLN
SPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYSMPR
DEAQLCAASELYTRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKD
NFVLHYDQIEKKPAIPSSQNVR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcctgctgaattcaaacctgaacaattctgcatcaaatcttcaagactcaact
ggaagaccgtttacagggtccttttctggtcaatctggatcagttccagggggtttccat
cactctggtttgcacaacatgcatggaagtttaaatatgccaaatatgcctggatcgttt
tctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatgcctgggagatttgcttcaaacaaccttccagttggcatgtcccagatccctcat
gggcattcaggagtcggtagtagaggattgaatgttggtggaggtccagcatttagtagt
agcctgaatattggtggtaccattcaaggcttatcctcaaacctgggtgctggtggtagt
cgtaattctgttcctgggatgtcagtatctccatctttgggaaatttgggtcctaggatc
actggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggt
ggattatctgtgccaagcatagcatcacgcatgaatttgagtggcaatgttggcagtggc
ggtctgaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcacct
caaatgctgaacatgatggggagttcatatccaacatctggaggttcattatctcagaac
caaatacaaggaggaaataattcccttggttctatggggatgctgcatgatgccagtgac
ggtgctccatttgacatgagtgattttccccagctgactggtcgacctagttctgcgggt
ggtccacaaggacaatatggctccctacggaagcaaggagttggtgttaacaccattgtt
cagcaaaaccaggaattcagcattcaaaatgaagacttcccggctttacctggatacaaa
ggcaacactacagattatgctatggagttgcatcacaaggaacaacttcatgataatgta
cctgttatgcaagcgcaacaatatccgatgtcaagatcagttggctttaacttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
ccccaaaatatcggactaagaccactaaattctccaaatcaaacttctagtttgggatca
tatgagcaacttatccagcaataccagcaacctcaggctcaaaatcctttcagattgcag
caggtgtcttcagctacccagtcatatagggatcagagtctaaagtccatccaggggggc
caaacaccatctgatccatatggcttgatgggattgctaggagttatcaggatgaatgat
gttgacttatcatctcttgctttaggaatagatttgacaacattgggtttaaacttgaac
tcaccagacaatctgtacaagacatttggctctccatggtcaaacgagccagcaaaagga
gaacctgagtttcatactccagcttgctactccgctgagcaacctccaccactacaacct
atacattttcagaaattccagacgccaacactgttttacatcttctatagcatgccaagg
gatgaagctcagctatgtgctgctagtgagctgtatactcgaggatggttctaccataaa
gaagtgcgtgtgtggctcaccagaattccaaatgttgagcctctggtcaaaacacctcat
tatgaacgaggatcttatggttgctttgatccaaacaactgggagacaatccgcaaggac
aactttgttctccattatgatcaaatagagaagaagccagctatcccttcatcccaaaac
gttaggtga
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