KEGG   Oryza glaberrima (African rice): 127761935
Entry
127761935         CDS       T08853                                 
Name
(RefSeq) uncharacterized protein LOC127761935
  KO
K12828  splicing factor 3B subunit 1
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127761935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogl03041]
    127761935
   03036 Chromosome and associated proteins [BR:ogl03036]
    127761935
Spliceosome [BR:ogl03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    127761935
 Complex B
    127761935
 Complex C
   U2 SnRNP specific factors
    127761935
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    127761935
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_2 HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd
Other DBs
NCBI-GeneID: 127761935
NCBI-ProteinID: XP_052142230
LinkDB
Position
2:16156808..16161762
AA seq 1119 aa
MSPDRHDPFAAAETTPDPSTRTYADAMRDNQPAPATKRRNRWDQSQEDEGDGAAATGAKK
AKTASSSSSSHWDAAPDAATPGIGRWDATPGRAGGATPSLKRNRWDETPTPGRMADADGT
PAPSVAWDSSSTPTPKKQRSRWDETPAGVGSTAPRATDAVTPAGYAPGPTPFDAADLATL
SPGQIARGAMTPEQYQLLRWERDIEGRNMPLTDEELDTMLPQVGYKILDPPASYQPIRTP
ARKLLATPTPLFTPLYAIPEENRGQQFDVPKELPGGLPQMKPEDYQYFGTLLNEGEEEEQ
LSPEEHKERKILKLLFKVKNGTPQQRKAALRQLTDKAQEFGAGPLFNKILPLLMQPTLED
QERHLLVKVIDRVIYKLDDLVRPFVHKILVVVEPLLIDEDYYARVEARQIISNLSKAAGL
ATMIATMRPDIDNTDEYVRNTTARAFSVVASGLGIPALLPFLKAVCQSKKSWQARHTGIK
IVQQIAILMGCAVLPHLRSLVDIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDT
VLRPLWKGTKSHRGKVLAAFLKAVGFIIPLMDVEYASYYTRGVIPILIREFQSPDEEMKK
FVLKVVKQCVSTEGVEADYIRNGILPEFFRHFWIRRMALDRRNYKQLVETTVEIANKVGV
ADIVGRIVEDLKDESEPYRRMVMETIEKVVAHLGASDIDRHQEELLIDGIVYTFQQQTSD
DSNVILNGFETVANALGQRVKPYVPQICGIIKWMLNTSSAKARQRAADLMSRIAIVMKLC
QEERLMCHLGHILYESLGEEYPDVLVSILGALKAIVNVVGMTKMTPPIKDLLPRLTPILK
NRHEKVQENCIDLVGRVADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIA
KAIGPEDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVRN
GILKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCE
DALVHLLNLVWPNIFETSPHVINAVMEAIDGMRVALGSAVILNYCLQGLFHPARKVREVY
WKTYNSLYIGAQDALVAAYPALDIDGNNIYSRPELAMFV
NT seq 3360 nt   +upstreamnt  +downstreamnt
atgtcgccggatcgccacgacccttttgctgccgcggagaccactccggacccatccacg
cggacctatgccgacgccatgcgcgacaaccagcccgcgcccgcgacgaagcggcggaac
agatgggaccaatcgcaggaggacgagggggatggcgccgccgctactggggccaagaag
gcgaagactgcctcctcctcctcctcctcacattgggacgccgcccctgatgctgcaact
cccgggatcgggcgctgggacgccacgcctgggcgcgccggaggtgcgacgccctccctg
aagaggaatcgttgggatgagaccccgactccagggaggatggctgatgcggatggaacc
cctgcaccgtccgtggcgtgggattcttcttccaccccaacgcccaagaagcagagatca
aggtgggatgagacgcctgcgggtgtggggagcacggcacctcgcgctaccgatgctgtt
actcctgcaggttatgctcctgggccaaccccgttcgacgcggcggacctcgccacgctg
tcacctggccagattgctcgtggcgcgatgacaccggagcagtaccagctcttgcggtgg
gagcgggacatcgaggggcgtaacatgcctctgactgatgaggaacttgataccatgctc
ccgcaggtggggtacaagattcttgatcctccggcttcttatcagcccatacgcacaccc
gcaaggaagcttctcgcgacgccgacaccgctgtttacaccgctctatgccatccctgag
gagaaccgtgggcagcagtttgatgtgcccaaggagttgcctggtgggttgccacaaatg
aagccggaggattaccagtactttggaacattgctgaacgagggagaggaagaggagcag
ctgtcaccagaggagcataaggagaggaagatcttgaaactcctgttcaaggtgaagaat
ggcacaccacaacagcggaaagcggcgcttcgacagctcacggacaaggcgcaggaattt
ggtgctggcccgctgttcaacaagatcctgccgttgctcatgcagccaacgcttgaggac
caggagcgtcatcttctggtgaaggtcattgatagagtgatatacaagctggatgatctg
gttcgtccgtttgtgcataagattcttgtggttgttgagccacttctgattgatgaggat
tactatgctcgtgttgaggcccggcagattatctcaaatcttagcaaagcagctggactt
gctactatgattgccaccatgagaccagatattgataacactgatgagtatgtgaggaat
accactgctagggcattcagtgtggttgcttctggtttggggattcctgctctcttgcca
ttcttgaaggctgtctgccagagtaaaaagtcttggcaggctcggcacactggtattaag
attgttcagcagattgctattctcatgggctgtgctgttctgccacacctcaggtcctta
gttgatatcattgagcatggtctgagtgatgaaaaccagaaagtacggacaatcaccgca
ctgtctcttgctgcacttgctgaggctgccgcaccctatggtatagaaagttttgatacg
gtgttgaggcctttgtggaagggtaccaaatctcaccgtggaaaggtccttgctgctttc
ttgaaagccgttggtttcatcatccctcttatggatgttgaatatgccagttactacacc
aggggggtgattccaatcctgattagggagttccagtcaccagatgaagagatgaaaaag
tttgtcctgaaggttgttaaacaatgtgtcagtacagagggtgtagaggctgactatatc
cgtaatggcatccttccagagttcttccgtcacttttggataaggagaatggctctagat
cgtaggaactataaacaacttgtggaaacaacagtggagattgcaaacaaggttggagtt
gctgacatcgttgggaggattgttgaggatctcaaagatgaaagtgaaccttacaggaga
atggtgatggaaacaattgagaaggtggtggctcacctgggtgcctcagatattgatcgt
catcaggaggagcttcttattgatggcatcgtgtatactttccaacagcagacaagtgat
gattcaaatgtcatacttaatgggtttgaaacagttgcgaatgcacttggccagagggtt
aagccttatgttcctcagatttgtggtatcatcaagtggatgctgaacacctcgagtgca
aaagctaggcagcgagctgctgatctgatgtcaaggatagccattgtgatgaagctgtgc
caagaggagcggctgatgtgtcacttgggtcatatattatatgagtccttgggggaggag
tatcctgatgtgctggtttcaatccttggagctttaaaggctatcgtgaatgttgttggt
atgacaaagatgacgccaccaatcaaagatcttcttcctcggttgaccccaatcttaaag
aataggcatgaaaaggtccaagagaactgtattgatttagttggtagggttgctgatcgt
ggagcagagtttgtgccagccagggaatggatgaggatttgcttcgagctgcttgaaatg
ttgaaggctcacaagaagggtattagacgagccactgtgaacacatttggctatattgcg
aaggctattgggccagaggatgtgttggccactctattgaacaacttgaaggtgcaggag
cgtcagaaccgagtttgcactactgtcgcaatcgccattgttgctgaaacttgctccccc
tttacagttttgcctgcccttatgaacgagtaccgagtaccagagctcaatgtccgtaat
ggtattttgaagtctctgtcatttctttttgaatacattggtgagatgggtaaagattac
atatatgctgtcacgccattgcttgaagatgctctgatggatagagatctggttcatcgg
cagactgctgcctctgctgttaagcacatggcactaggtgttgctggcttgggttgtgag
gatgctcttgtccacttacttaaccttgtctggcccaacatatttgagacatctccccat
gtcataaatgctgtcatggaggcgattgatggcatgagggttgccctaggctcagctgtg
attttgaattattgcctccaaggcctttttcatccagcaaggaaagtgcgtgaagtatac
tggaagacctacaactctctatatattggcgcacaagatgcacttgttgctgcttatcct
gcgttggacattgatgggaacaatatctacagccgcccagagttagctatgtttgtgtga

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