Oryza glaberrima (African rice): 127762195
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Entry
127762195 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127762195 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127762195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogl04131
]
127762195
Membrane trafficking [BR:
ogl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127762195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
WDR55
TPR_VPS8_2
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_EML
TPR_Vps41
WD40_WDHD1_1st
ANAPC4_WD40
Clathrin
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40
WD40_Prp19
zf_RING_Vps8
zf-RING_2
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
EIF3I
Motif
Other DBs
NCBI-GeneID:
127762195
NCBI-ProteinID:
XP_052142560
LinkDB
All DBs
Position
2:1163664..1175158
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AA seq
1926 aa
AA seq
DB search
MSTSSPAMAPPSQPPPPPPSQELDLDAFLPSSPTSSSVSEPDGDGAADHRRAVDDLLLLL
SSSSSDTDEPPARPSPISQLKTLASIRAPAPSPKPSPSPSPSPRRSTSASPSATLSSLVS
RTFSNNAASSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSASAP
IEKLLDEGSGSEVSEEFPSAGNSEAGVAEKANAEGNADVSKEATSGSGDEELEADKHGEE
VRFEEKSEPTESVEEVAADSAVAENINEHKQLGGESLAETDRPADQIGLDDEEHVDDRTA
DENLVEFGDVEDQGGAACEEDVDDEQESERSETSVEEHSESESIIDKAIEERLEISRKTE
KIVEKRPKLSMKPLEQAEELEKRQASFGQHWEEGAAAQPMHLEGIGRGQPAIGYMQIEVD
NPITRAMSSQSFGQDHGSPQVMTVHKSYIALGMSKGSVIVIPSKYSIHQADDTDAKMLFF
WNQGEKTQSSVTAMCFNQQGDLLLVGYNDGHMTIWDVQKGTAAKVIYGEHTAPVVHACFI
RQSKAITGDSKGLVLLHTFSIIPVINRLTIKGTQRLFDGNTGIVLSACPLLVDESFGSSN
SSTQGNLTTSSGGGLSSMMGGVVGGVVGVDSGWKFFNEGSSPIEDGVVVMFIMHQHALVV
RLRTNIDHVDHIETFSRPDGAREGSIAYAAWKYTTSSSDSPSIVEEQVSWLALAWDRQVQ
VAKFVKSKMIKHKEWKIDSAAIGVAWLDDQMLVVLNLRGQLCLFSKDGNELRRTVFVLDG
YIFDESILYHTHFSNRFGNPEKHFNNSVAVRGATVYILGPNFLTVSRLLPWKERIEALKR
AGDWMGALDMAMKLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYIHYVFEYISIALS
SHTGKGGASDGLVDADRSLLTQREEQYARVGGVAVEFCVHIGRNDILFDTVFSKFVAAKS
GGMFLEVLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCILHMDISSLDFNQVVR
LCREHGLYGALIYLFNQGLKDFRTPLEELLSVIQNASRKEGASTCYRMLVYLKYCFQGLA
FPPGHGTIPQSRLHSVREELLQFLLEESKTSSTDVYKSFKSSSEKCPNICYLLWMDTEAA
LEVLKCAFAHERFEPRDNPSSTPDAHVSEDGDNINIGSPDSENIMLQNVVDTIVDIVGLE
NEAIHSIVIGAAESEIWPSEKDFGYLIEFVSFFVSHKRAKASQRVVRHILRYLTSSNILS
SDDKKTPTQKEKEVLQLFDAVPQTDWNSDYVLHICLDAHFHQACGLIYMTRKQNLPALES
YMKDTLEPFHAFIFINKKLSELADYEASSFRSSVISHFPELVKLSRECAFVLVIDHFHDE
IQKILSELHSDHHSLFLFLKTAIEVHLSGKLNFSELNARKNSTVELQYSSRELEFYIQRL
SNLPKLLDRNPVIMTDEIVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGITD
AAAFLQERVGDVGSALALILAGLDEKINLFISSVENAFSGIASKSISEIEQPDIVLKMSE
AHPVLDALRAAIGLCQRNSQRLNPEESQSLWFQLLDSFSEPLKKLYGSKDVNGKGVRSNG
SETSNRQPKDKGFSRKTRISAYQRCLNALRRVFSQFVGEIIEAMAGHIPLPAIMGKLLSD
NRSQEFGDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGLAPQTFVC
CICNCSLSKESAVSAIRVFSCGHATHLQCESEQSKSSNRDSKDGCPICLSTSNTQAQNKS
PISENGLGKHFGAESEVSHGTYHTHETDHVDRSRGLQQMSRYEILNHLQRPQSLHIETVP
PLRLSPPAIYHEKIQKRTTTMGESSKHSVRTEKPQRIWQMKEPRSKRSGNRVLPKSSMLS
SQNNQV
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtcatcgccggcgatggcgccgccgtcccaacctccgccgccaccgccgtcg
caggagctcgacctagacgccttcctcccctcctcccccacctcctcctcagtctcggaa
cccgatggcgacggcgccgccgatcaccgtcgcgccgtcgacgacctcctcctcctcctc
tcctcctcctcctccgacaccgacgagccgcccgctcgacctagccccatctcccagctc
aaaaccctagccagcatccgagccccagctccgtcccctaaaccttcgccttccccatcc
ccttcgcccaggagatccacatccgcctcgccgtcggcgacgctctcctccctcgtctcg
agaaccttctcgaacaacgccgcttcgtcttcctcgtcgaagcctctcccttcgctcttc
cgcggcgtccggcccagccccaagcccggcgccgctctcgccgccgccgccgccgcgtcc
cgcgctgtcctcaccccccatgccgctgccatcaagtcccggcgttccgcctccgcgccc
atcgagaagcttctagacgaaggctccggttccgaagtctctgaggagtttccttccgct
ggaaattcggaagcgggagtagcggagaaggctaatgcggaagggaatgcggatgtgagc
aaggaagctaccagtgggagtggtgatgaagaattggaagcggacaaacatggagaagag
gtgcggttcgaagaaaaatctgagcccactgagtcggtggaagaagttgctgctgattct
gctgttgccgagaatatcaacgagcataagcaacttggaggtgaaagtttggcagaaact
gatcgacctgcggatcaaattggtctcgatgatgaggaacatgtagatgaccgaaccgcc
gatgaaaatttagtagaatttggtgatgttgaggatcagggtggggctgcttgcgaggaa
gatgttgatgatgagcaggaatctgaaagatccgaaacctctgtggaagagcattcggaa
tctgagagcattattgataaggcaatcgaagagaggttggagattagcaggaaaactgag
aagattgtggagaaaaggcctaagttgtcaatgaaaccactggagcaggcggaggagctt
gagaagaggcaggcttctttcgggcagcactgggaggaaggagcagcagcacaacccatg
catctggaggggattggaaggggccaaccagctattggttacatgcagattgaggttgac
aaccctataactcgtgccatgtcctcccagtcatttggacaggaccatggctctccccag
gtgatgacagttcataagagctatatagcattgggaatgtctaaaggatctgtcattgtt
ataccaagcaaatattccatccaccaagctgacgatacagatgcaaagatgcttttcttt
tggaaccaaggtgagaaaactcaatcatcggtgactgccatgtgcttcaaccaacaaggt
gatcttcttctagtaggatacaatgatggccatatgacaatctgggatgtacagaaaggt
acagctgcaaaagttatatatggtgagcacacagcacccgtagtgcatgcttgctttatc
cgccaatctaaagccatcactggtgattcaaaagggctagtgctgttgcacacattttcc
attattccagtaatcaatcgcttgaccatcaagggaacccagcgcctttttgacggaaac
accggaattgtgctctcagcctgtcctcttctagtggatgaatcatttggttctagcaac
tcttctacccagggaaacctgacaacctcgtctggtggtggtcttagcagcatgatggga
ggtgttgttggaggtgtagtcggagttgattctgggtggaagtttttcaatgaaggttct
tctccaatagaggatggtgtagtagtcatgtttattatgcaccaacatgctcttgtggtt
aggctccgtaccaatattgatcatgttgaccatattgaaaccttctctagaccagatgga
gcacgggagggttccattgcatatgctgcatggaaatatacaacatcctcgagtgattca
ccatcaattgttgaagaacaagtatcatggcttgcacttgcatgggatcgtcaagttcaa
gtggcaaagtttgttaaatcaaagatgattaaacataaagaatggaagattgatagtgca
gcgattggtgttgcctggttagatgatcaaatgttggttgtacttaatttgcgagggcag
ctctgtttgttctccaaagatggcaatgagcttcgcaggactgtatttgttcttgatggt
tatatcttcgatgaaagcatactataccatacacatttttctaacaggtttggcaacccg
gagaagcattttaacaattcggtagcagtaagaggtgctacggtgtatattcttgggcca
aatttcctcacagtttcccgacttcttccatggaaggagcggattgaagcactaaagaga
gctggtgattggatgggtgcactggacatggctatgaaactttatgatggccagacacag
ggtgttgttgatctcccgagaacagttgattctatacgagaagccataatgccatattta
gtagagttgctgctgtcatatatacattatgtatttgaatacatttcaattgctttgtca
agccatactggaaaagggggtgcatcagatggcctggtagatgctgataggtccctgctg
acacagagagaggaacagtatgcacgtgtagggggggttgcagttgagttttgtgttcat
attggacgaaatgacatccttttcgacacagtcttttctaagtttgttgcggcaaaaagt
ggaggtatgtttctggaggtgctagagccctatatattgaaggatatgcttggctctttg
ccacctgagattatgcaagcactagtagagcattatagtagcaaaggatggttgcagcga
gttgaacaatgcattcttcatatggatatttcttcattggattttaatcaggtagtccga
ctgtgtcgtgaacacgggttgtatggtgcactaatttatttgttcaaccaaggtctgaaa
gatttccgcacacctctagaggagcttttatctgtcattcagaacgctagtagaaaagaa
ggtgcttctacttgctacaggatgcttgtttacctgaagtattgctttcagggcttagca
tttcctccagggcacgggacaattccccaatcccgccttcattcagtacgagaagaacta
ttgcaatttttgcttgaggagtctaagacttccagtactgatgtatacaagagcttcaaa
tcctccagtgaaaaatgcccaaacatatgctatctactatggatggatactgaagctgct
ttggaagttctcaaatgtgcctttgcacatgagagatttgaacctagagacaacccatct
agtactcctgatgcacatgtctcagaggatggagacaatattaatattggaagccctgac
agtgaaaatattatgttacaaaatgtggtggacaccattgtggatattgttggtttggaa
aatgaggctattcactcaattgttattggagcggctgagtcagaaatttggccttcagag
aaggactttggttatctaatcgagtttgtgtctttttttgtttcccacaaaagggcaaaa
gcatctcaaagagttgttaggcacatcctcagatatcttacttcatccaatatcctgtca
tctgatgataagaaaacaccaactcaaaaagaaaaggaagttcttcagctcttcgatgca
gttcctcaaactgattggaattctgattatgtgttgcatatttgcttagacgctcatttt
caccaggcttgtggattgatatatatgaccagaaagcaaaatttgcctgctttagaaagt
tacatgaaggatacactggaaccattccatgcttttatcttcattaacaaaaagctatcc
gaattggctgattatgaagcttcgtcatttcgttcctcagtaatatctcattttcctgag
ctagtcaagctaagcagggagtgcgcttttgtcttggtcattgatcatttccacgatgag
atccagaaaatattatcagagcttcattctgatcaccacagcctctttcttttcttgaaa
actgcaattgaagtgcacttgtcaggaaaactgaatttcagtgaactcaatgccagaaaa
aatagcacagttgaacttcaatactcatcccgtgaacttgaattttatatacagagactt
tcaaatcttcccaagttgttggaccgcaatcctgttattatgactgatgagattgttgaa
ctctatctggagcttctatgtcagtacgagcgaaggtctgttttgaagtttctggagact
tttgacagttacagattggagcggtgtttgcatctttgtttagattatgggattacagat
gctgctgcattcttgcaagagagagttggtgatgttgggagtgcactggcacttattcta
gcaggtcttgatgagaaaatcaacctatttatttcttcagtggaaaatgctttctctggg
attgcatcaaaaagtatatctgagatagagcagccagacattgttctaaaaatgagtgag
gctcatcctgtgcttgatgcactacgtgctgccatcggattgtgtcaaaggaattcacaa
agattgaacccagaggagtcccagtccctttggttccaactgcttgactccttctcagag
cccctgaaaaaattgtatggaagcaaggatgtaaatggaaaaggtgtcaggtctaatggg
agtgaaacatcgaatagacagccaaaggacaaaggattctcacgaaaaacaaggatttca
gcttatcagaggtgcttgaatgccctgcggagagtattttcgcagtttgttggagaaata
atcgaggcaatggctggacatatacccttaccagcaatcatgggaaagctattatctgac
aacaggagtcaagagtttggtgattttaagctcgttatacatagaatgctgtctatgtat
ctttatgaaaaaagaatactggaaacagccaagtcagtaattgaggatgattcattctac
accttgagcttactaaagagaggggtttgccatggacttgctccacagacttttgtatgt
tgcatatgcaactgctctctttcaaaagaaagtgctgtttcagcaatacgagtattcagt
tgtggacatgcaactcatctccaatgtgagtctgaacaaagtaagtcatccaatagggat
tccaaagatggatgcccaatttgtctttcaactagtaatacacaagcccaaaacaaatca
cctatatctgagaatgggcttgggaaacattttggggctgaaagcgaggtatcacatggc
acctatcatactcatgaaacagatcatgtcgacagatctcgtgggcttcagcagatgtca
cggtatgaaatactgaatcatcttcagaggccacagagtttgcatatagaaactgtacct
ccattgaggctttcaccaccagcgatatatcatgaaaagatacagaagagaacaaccacg
atgggagaatccagcaagcattcagttagaactgaaaaaccccagagaatatggcaaatg
aaggaaccaagatcaaaaagatcagggaaccgagttctgccaaagtcaagcatgttgagt
tctcagaataatcaagtgtga
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