Oryza glaberrima (African rice): 127762274
Help
Entry
127762274 CDS
T08853
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127762274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127762274
03041 Spliceosome [BR:
ogl03041
]
127762274
03036 Chromosome and associated proteins [BR:
ogl03036
]
127762274
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127762274
Spliceosome [BR:
ogl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127762274
Complex B
127762274
Complex C
U2 SnRNP specific factors
127762274
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
127762274
TFTC complex
127762274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
127762274
NCBI-ProteinID:
XP_052142679
UniProt:
I1NX33
LinkDB
All DBs
Position
2:1933272..1938524
Genome browser
AA seq
1234 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSSSSSSSTQEIAVARGTTLELLRPDP
ETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRLDKVHQE
TFGKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNT
LTFSLTALDCGFDNPVFAAIELEYAESDRDPTGQAAEQAQKHLTFYELDLGLNHVSRKAS
EPIDNGANLLVTVPGGGDGPSGLLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIV
AAATHRQKSLFFFLLQTEYGDIFKVDLEHSNDTVTELRIKYFDTIPVTSAICVLRSGFLF
AASEFGNHALYQFRDIGRDVDVESSSATLMETDEGFQPVFFQPRALKNLYRIDEIESLMP
IMDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNI
NDMFDAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRH
IREDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDV
ACLAIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLMFLEVQA
SVGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHR
QAMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIER
LGETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREAAKKECLEAAGVTENG
NANNGDQMENGDGQEDGAEDRNTLPDEQYGYPKAESERWVSCIRILDPKSRDTTCLLELQ
DNEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNLSAGFIHIYKFVDEGRSLELLHK
TQVEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYV
GDMQESFHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGNIYFARLPQDL
SDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTV
MGSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQF
PSLPADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatcggc
agcttcagcgggcgcgactcgaagaagtcggcggcgtccgggtcgtcgtcgtcgtcgtcg
tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg
gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc
gcccagttccgcctcaccggcgccaccaaggactacctcgtcgtcggctccgactccggc
cgcctcgtcatcctcgagtactcccccgaccgcaaccgcctcgacaaggtccaccaggag
accttcggcaagtccggctgccgccgcatcgtccccggccagctcctcgccgtcgacccc
aagggccgcgccctctgcatcgccgccctcgagaagcagaagctcgtctacgtcctcaac
cgtgacgccgccgcgcgcctcaccatctcgtctcctctcgaggcgcacaagtccaacacg
ctcaccttctccctcactgccctcgactgcgggttcgacaaccctgtcttcgccgccatt
gagcttgagtacgccgagtccgaccgcgaccccaccgggcaggctgccgagcaggcgcag
aagcacctcacattctatgagctagacctggggctcaatcatgtctcgcgcaaggcctcc
gagccgatagataacggtgctaatctactggtgactgtgcctggtggtggtgatgggcca
agcgggctcctcgtgtgctgcgacaactttgtgctttaccggaaccaggggcacccggaa
gtgcgggctgtcattccacgccgcgctgatctcccggctgagcgcggtgtcctcatagtc
gcagccgccacgcacaggcagaagagcttgttcttcttcttactacagactgagtacggc
gatatcttcaaggttgacctcgaacacagtaatgacactgttactgagctcaggatcaag
tactttgacaccatacctgtgacatctgctatctgtgtgctgcgctcaggttttctcttt
gctgcttctgagtttggcaaccatgcactttatcagttccgtgatattgggcgggatgtg
gatgttgagtcgtcttcagctacactgatggagacagatgaggggttccagcccgtattc
tttcagccaagagcactcaagaacctgtaccggatcgatgaaattgaaagtctcatgcca
atcatggacatgcgtgttgcaaatctatttgatgaggaaacaccacaggtattcacagcc
tgcggccgtggtcctcggtccaccttgcgcatcctgaggcctgggcttgccattagtgag
atggctcgatcgatgttgccggctgagcctattgctgtctggactgtaaagaagaatatc
aatgacatgtttgatgcctacattgtcgtgtcctttgccaatgttacacttgtgctctcc
atcggtgagactattgaggaagtcagcgacagccagtttctggataccactcactccctg
gcagtttctctccttggcgaggactctctcatgcaggtccacccgaacggcatcaggcac
atcagggaggatggccgtgtgaatgagtggaggacacctgggaagaaaactatcactaag
gttggatcaaaccggctccaggtggtaatcgccctcagtggtggagagcttatctacttt
gagatggacatgacaggtcagcttatggaagtcgagaagcaggacatgtctggtgatgtt
gcatgcctggccattgcgccagttccagaggggagacagaggtcccgattccttgcagtt
ggttcctatgataacaccatccgaatactctccctggaccctgatgactgcttgcagcct
ctgagtgtccaaagtgtctcttcagccccagagtccctcatgtttctagaagttcaggca
tcagttggcggtgaggacggtgcggaccatccagccaaccttttcctcaatgctggcctg
caaaatggtgtcctgttccgcaccaatgttgacatggtcactggtcagttatctgacaca
cgatctcggttccttggcctgagacctccaaaactgtttccgtgcatagttagccaccgg
caagcaatgctttgcctgtccagccgtccctggcttggctacatacatcaaggccacttc
ctattgactccactgtcctgtgatacacttgaatctgctgcatccttctcttctgatcag
tgctcagaaggtgttgttgccgttgctggtgatgccctacgaattttcaccattgaacgc
ctgggggagactttcaatgaaacagccatccctctgcgctacaccccaaggaaatttgtg
attcttccaaaaaagaaataccttgctgtcattgagagtgataaaggtgcgctcagcgca
gaagagcgagaagcggctaagaaggagtgccttgaggctgctggtgttacagaaaatggt
aatgcaaataatggggatcagatggagaatggtgatggtcaagaagatggtgctgaggac
agaaacacacttccagatgaacagtatggttatccaaaggcggaatcagaaaggtgggtt
tcttgcatcaggattcttgatccaaagagcagagacacgacttgtctgcttgaattgcaa
gacaatgaagcagctgttagcatttgcactgtgaactttcatgataaggagcatggtact
ctcttggctgttggtactgccaagggattgcaattctggccaaagaggaacctttcagct
gggttcatccacatatacaagtttgtagatgaagggaggtcacttgaactgcttcacaag
acacaggtggaggaagtacctcttgccttgtgccagttccaaggacggttgcttgctggt
gttggttcagtcctcaggttatatgatcttgggaagaggaagttgctcaggaagtgtgaa
aacaaacttttcccaaggacgatagtgtctatccatacttaccgagataggatctatgtt
ggtgatatgcaagagtcatttcattattgcaagtacagaagggatgaaaaccaactgtac
atcttcgctgatgatagtgttcccaggtggctcacagcagcaaatcacatagattttgat
actatggcaggggcagataagtttgggaacatatattttgctcgccttcctcaggatctc
tcagatgagattgaagaagacccaactggggggaagattaaatgggagcaagggaagttg
aatggggccccaaacaaagtagaggagattgttcagtttcatgttggtgatgttgtcaca
tgtttgcagaaagcctctttaataccgggaggcggcgaatgtcttatttatgggactgtg
atgggcagtgttggggcactgcttgcattcacctccagggaagatgttgacttcttttct
cacttggagatgcatctccgccaggagcatccaccattatgtggaagagatcacatggcc
tacagatctgcttattttccagtgaaggatgtgattgatggtgacctctgtgagcagttt
ccatccctcccagctgatatgcaaaggaagattgccgatgaactcgacagaactcctggt
gaaatcctgaagaagctggaggacattaggaacaaaattatctga
DBGET
integrated database retrieval system
