Oryza glaberrima (African rice): 127762275
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Entry
127762275 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127762275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127762275
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127762275
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127762275
mRNA degradation factors
3'-5' decay
Ski complex
127762275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
127762275
NCBI-ProteinID:
XP_052142680
LinkDB
All DBs
Position
2:complement(3036021..3048285)
Genome browser
AA seq
1376 aa
AA seq
DB search
MGDLTTSSPASEVPFRVSFSGHGGHLRLDPTPNPPSPIPEFVLPPAYPPESPSSVKEYLE
ANYLNPELHLPTAADGARVWDLDWFELARPPLEPSAARTMLVPAWEPPFRRRRPPLSSSS
SRQESQVWDPESVQMDMSDVFDSGTGGITPRMPGPAKDFVRGSVNSRPFRPGGLHDDAAA
AAALEKAFPEGARNGDWVHELMSGGPAQVNPPGFRKGLDLGNLKEYKSHWKCYQDGERVD
EQSTSSSNDTMDKYSVQFDDLFKIAWEEDSDDKVPREDHVQQLVGDEETNDVDKQNISKL
QNASETIENLDIEKQKGGAQGDVSEPQSDLDQMLLSSVKDTSRDSSGSGDGSMAKEGKVW
ALVGGDEDIVTNFYKLVPDMAIEYPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAE
YAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILR
SMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFA
DWIGRTKQKKIHVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSS
KLGMKPGSKPGTTAVRAGTQGRNPDTSSRDRDQKNPKHHHASSSAAAVQQSTSGPRRSES
SFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRL
KGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA
PARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKN
LIVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLR
QPTKTIECIKGEPAIEEYYEMVLEAEAHRESITEAIMQLPASQQSLTPGRLVVVKSQSDD
DHLLGVIVKTPSAALKQYVVLVLTGDCTSSALAPDSSNQNEKEAGDFKQGYFVIPKGKRS
MEDEYFSSVSTRKGSGVINIKLPYKGDASGMGFEVRAIENKEIMSICASKIKIDQVRLLE
DPSKTVYSKTVQMLIKEQPDGNKYPAALDAIKDLKMKDMLLVENYYAYQRLLQKMSENKC
HGCIKLKEHIALMKEQKVYKDQLNDLKYEMSDEALQQMPEFQGRIDVLKEIYYIDSDLVV
QLKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSALVFQQRNTSEPSLTPKLAD
ARKRIYDTAIRLGKLQREFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS
EGLIVRTIVRLDETCREFRNAASIMGNSALYKKMETASNAIKRDIVFAASLYVTGI
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacctcaccacctcgtcgccggcgagcgaggtgccgttccgcgtcagcttctcc
ggccatggcggccacctccgcctcgaccccacgcccaatccgcccagccctatacccgag
ttcgtcctgccgccggcgtacccgccggagagcccgagcagcgtgaaggagtacctcgag
gccaactacctcaacccggagctccacctccccaccgcggccgatggcgcgagggtgtgg
gatttggattggttcgagttggctaggccgccgctggagccctccgccgcgcgcaccatg
ctcgtgcccgcctgggagccgcccttccgccgccgacggccgccattgtcgtcgtcgtcg
tcgcggcaggagtcgcaagtgtgggatcctgagtccgtgcagatggatatgagcgacgtg
tttgattcgggcaccggtgggataacgccgcggatgcctggccctgcgaaggacttcgtg
agggggagcgtgaacagccgcccgttccgcccagggggcctgcatgatgatgcggctgcg
gctgctgctttggagaaggcatttccagagggtgcacgcaatggggattgggtgcacgag
cttatgagcggagggccagctcaggttaatcctccaggattccgcaagggattggacctg
ggcaatttgaaggagtacaaaagccattggaagtgttaccaggatggagagcgtgtagat
gagcaatccacatcttcatcaaatgacaccatggataagtactcagtgcagtttgatgat
ctattcaagatagcatgggaggaagattctgacgacaaggtgccgcgtgaagatcatgtt
cagcaattggttggagatgaggagaccaatgatgttgataaacaaaatattagcaaactg
caaaatgcttctgaaactatagaaaatctggacattgaaaaacagaaaggtggtgcccaa
ggagatgtttctgaacctcaatcagacttggatcaaatgttattgtcctcagttaaagat
actagcagagattcaagtgggtcaggtgatggcagtatggcaaaggagggcaaggtttgg
gcacttgttggtggggatgaagacattgtgactaacttctataaacttgttccagatatg
gcaattgagtatccatttgaactagacaaattccagaaggaggctatatattatcttgag
aagggtgaatcagtctttgtggcagctcatacatcagcaggaaagacggttgttgcagag
tatgcattcgctttagcaacaaaacactgcacccgggctgtctatactgctcccattaaa
actatcagcaatcaaaaataccgagatttctgtgggaagtttgacgtgggacttctcaca
ggagatgtcagtatcagaccagaggcaacttgcttaattatgaccacagaaatattacgt
tcaatgctctacagaggtgctgacatcatacgtgatattgaatgggtaatttttgatgaa
gtgcattatgtaaatgatgcagagagaggtgtagtttgggaggaagttattataatgctc
ccgaagcacatcaacattgtccttctttcggcaacggttccaaacacagttgaatttgct
gactggattggtcgaacaaagcagaagaaaattcatgtcacatcgaccaacaaaaggcct
gttcccctggagcactgtttgttctactccggagaagtgttcaaaatatgtgagaaggat
gcatttcttactcaaggatatagagaagccaaggaggtttttaaaaagaaaaattcgagc
aagcttggaatgaaacctggttcaaaaccaggaacaactgcagtgcgtgctggaactcaa
ggcagaaatccagatacatctagtagagatagagatcagaaaaatccaaagcaccatcat
gccagctcatcagctgctgctgttcagcaaagcacctctgggccacggagatcagagtct
tcattctggatgcccctcataaataaccttctgaagaaatccctcgtgcctgtggtaatt
ttttgcttctcaaaaaatcgatgtgatagatcagcagagagcatgtttggtgcagatctc
accagtaactcagagaaaagtgaaatccgcctcttctgtgacaaggccttttcacgcctt
aaaggatctgataggaaccttccacaggttgtagggatacaaagccttctacgtagaggg
attggagtacaccatgctggacttcttcctatcgtcaaagaagttgttgaaatgctgttt
tgtcgtggcgtcatcaaggtgttattttccactgagacatttgcgatgggcgttaatgct
ccagcaaggacggtcgtgtttgattccttaagaaagtttgatggaaaagaacatcggaag
ttacttccaggggagtatattcaaatggccgggcgagctggtaggagagggcttgataac
attggtacagtgatcgttatgtgtcgtgatgaaattcccgaagaaagtgatttgaagaat
ttgattgttggaaaaccaactcgactagaatctcaatttcggttaacatacactatgata
ctgcatcttctacgtgtggaggaactcaaggtggaggacatgctaaagagaagttttgca
gaattccatgcacaaaagaatttgcctgagaaggaaaagttgcttctgcagatgcttcgt
caacccacgaagacaattgagtgcataaaaggagagccggctattgaagaatactacgag
atggtcttagaagctgaggcacacagggagtctattacggaagcaattatgcagttgcct
gcttctcaacagtcccttacacctggccgtctggttgttgttaaatcccaatcagatgat
gatcacttgctcggtgtaattgtgaaaactccatctgctgcactaaagcaatatgttgtt
cttgtactgaccggtgattgcacatcgtcagcactagctcctgattcatccaaccagaat
gaaaaggaagcaggggattttaaacaaggatactttgttatcccgaaaggaaaacgtagc
atggaagatgaatatttctcttctgtcagtacacggaaaggttcaggtgtcatcaatatc
aagctaccatacaagggagatgcatctggaatgggttttgaagttagagcaatagagaat
aaagagattatgagtatatgcgccagcaaaataaagattgatcaagtcagactccttgag
gatccaagcaaaacagtttactctaaaactgtccagatgcttataaaagagcaaccagac
ggaaacaagtatcctgctgctttagatgcaataaaagatctaaaaatgaaagacatgctt
ctcgttgagaactactatgcttaccagagattactgcaaaaaatgtctgaaaataagtgc
catggttgtataaaattaaaggagcatattgcattgatgaaggagcaaaaggtgtacaag
gatcagctgaatgatttgaaatatgaaatgtcagatgaggcacttcaacagatgccggag
tttcaaggcagaatcgatgtactaaaagaaatctattacattgattctgatctagtggtg
caacttaagggccgagtggcctgcgaaatgaattccggcgaggagttgatatcaaccgaa
tgtctgtttgagaatcagttggatgacctagaacctgaagaagccgtagctattatgtct
gcattggtcttccaacaaaggaatacatcagaaccatctcttaccccgaaactagcagat
gccagaaagaggatttatgatacagcaatcagattaggaaagctccagagagagttcaag
gtgcctgtagatcccgaggaatatgcccgtgataatctcaagttcggtcttgttgaagtc
gtctacgaatgggcaaaggggaccccatttgcagacatctgtgagctgacagatgtatct
gaaggtctcattgtaagaacaatcgtgcggttggatgaaacttgcagggagttcaggaat
gcagcttccataatggggaactccgcgttgtataagaaaatggagactgcgtccaatgcc
attaagcgtgacatcgtctttgcagcaagcttgtatgtcacagggatatga
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