Oryza glaberrima (African rice): 127762326
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Entry
127762326 CDS
T08853
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127762326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127762326
03036 Chromosome and associated proteins [BR:
ogl03036
]
127762326
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127762326
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127762326
PBAF complex
127762326
GBAF(ncBAF) complex
127762326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Myb_DNA-bind_7
FtsK_SpoIIIE_N
Motif
Other DBs
NCBI-GeneID:
127762326
NCBI-ProteinID:
XP_052142764
UniProt:
I1NY61
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All DBs
Position
2:4984559..4988502
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AA seq
507 aa
AA seq
DB search
MATPSMPAPAAEAAAAATTATANYMPPAPPQPPSSGAPFSQPPSTAGTVKTEAPPPPSTS
ASSAASAAAPAPAAAAAEESPCTITIPSYSAWFSYDSIHETERRLMPEFFEGEAAAASGS
RGPEAYKYYRDTLVRRFRARPGRRLTLTEARRGLVGDVGSVRRVFDFLEEWGLINYGASP
SGAKQGRDKKEEAALSQSSLPIGATMPSKLCTGCRTVCGLAYFSCEKADISLCARCYVRA
NYRPGLTSADFKRIEITEDAKSDWTDKETLHLLEAVLHYGEDWKKVSHHVGSRSEKDCIA
RFTRLPFGEQFMGPKEDKIQFGNDCDLNEESGSHISKRLRLTPLADASNPIMAQVAFLSA
IVGSDVAVAAGRAAISAQSQVDISASETDSSINISKEEESSCTNGLSANDLLKEASANAQ
VQLEKERKAIEQSLSDIVGVQMKEIQDKIRRFEQKELLMEKERKQLHCLKELLFSDQLAV
VQHQRRPPAVTTESKDDEKPKPVISIS
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggccacgccgtcgatgccagcgccggcggccgaggcggcggcggcggcgaccacggcg
acggcgaactacatgcctcccgctccgccgcagccgccgtcctcgggggcgccgttctcc
cagcccccctcgacggcaggcaccgtcaagacggaggcccctccgccgccatccacctcg
gcttcctcagccgcctccgccgccgcccccgcccctgccgccgccgcggccgaggagtcg
ccctgcaccatcaccatcccgagctattcagcgtggttctcctacgactccatccacgag
accgagcgccgcctcatgccggagttcttcgaaggggaggcggcggcggcgtccgggtcc
aggggcccggaggcttacaagtactaccgtgacaccctcgtgaggaggttccgggcgcgg
ccggggcgtaggctgacgctcaccgaggccaggcgtgggctcgtcggagatgtcggctcc
gtgcgtcgcgtgttcgacttccttgaggaatggggtctgataaactatggagcttcgccg
tcgggagcgaagcaggggagagataagaaagaggaggcagcgttatcgcagtcctctttg
ccgattggggcaacaatgcccagtaagctttgcaccgggtgccgcaccgtgtgtgggctt
gcttatttctcttgtgagaaggcagatataagcctctgcgctagatgctatgtccgtgcc
aattaccggccaggtcttacttcggcagacttcaagcgaattgaaattactgaggacgca
aaatcagattggacagataaagaaactcttcaccttcttgaggccgtcctgcattatggg
gaagactggaaaaaggtttctcatcatgttggtagtcgatcagaaaaggactgcattgct
agattcacccgattaccttttggggaacagttcatgggacccaaggaggacaaaattcag
tttgggaatgattgtgatctcaatgaagaatctggatcacatatctcaaaacgactacgc
ctcacgccactggctgatgctagcaatccaatcatggcccaggttgcgttcttgtcagcc
attgttggttcagatgttgctgtagctgcagggcgagcagctatttctgcacagtcccag
gttgatataagtgccagcgagactgattcttctatcaacatcagcaaggaagaagaatct
tcttgcacaaatggtctttcagccaatgatttgctcaaagaggcgtctgccaacgcacaa
gtacaacttgaaaaggaacggaaggctatagagcagtctttatctgacatagtgggtgtt
cagatgaaggaaatccaggataaaatacgtcgtttcgagcagaaggagctgctgatggag
aaggagaggaagcaactccactgcttgaaggaattgctcttttctgatcagctagctgtt
gtgcagcaccaacgcaggcccccggctgtcaccacagagagcaaggacgatgagaaaccg
aagcccgttatcagcataagttga
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