Oryza glaberrima (African rice): 127762391
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Entry
127762391 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127762391
KO
K26109
nuclear exosome regulator NRDE2
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127762391
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127762391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
127762391
NCBI-ProteinID:
XP_052142851
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All DBs
Position
2:31359154..31367755
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AA seq
1164 aa
AA seq
DB search
MEPSPEIPPPPPAFAAGGEGDPHAHTTAAARSSSSSSLFPLFPLSAPEESSAPAAGSQWL
SNPSFSFDASSLNIPATASSSVPPPLSASSDEEEAPRPAPAKYDLLPYSPSPPASDEERR
DRRKDRKRRKRRREKERYNSAEASRKPGVRAWAGSETKLAKDYYFDAKGDQDNLAFGSIY
RMDIARYKSQNMPEARGLKRLLFHNLGVSVHMGHESDLDGLDSKARAGGRYYSAKYAVVE
RNKGFKHLKVLKKDNSAILPEDFIPLGIPSLPENNTTGEQELEESWEDEILRRTREFNKM
SREFPHNEKIWLDFARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLCLL
KAYGERDSTQNLLDKWEQILMKHPDSCKLWKQYLLLCQGEFSRFKVSDLRKSYAYAAQAL
SAACTKLCRQDTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQAQIE
FSLFSPPLHLTTSSKQRLFEHFWNNGGARIGEDGALGWSRWLAKDEESRQNIDIQENTQE
TERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAENPDDEDPSAQEDVESLLKKLGIDGDA
DYNSEVKDPKTWNRWSFMELSRDNEQWMPLHEKLGSLYSDDAPTGEDNDQLSRVILFEDI
TEFLFSLSSEEARFSLICQFIDFYGGKISRWTSTNSSSWIDRILSLEMITDDIQEDLSTV
SNLIDKNQTSVHNKMVSLLGTMHEFSQRPGTAKFLKNAILLFLDVFPRNHILEEAVLVTP
QIHTAQEKSLATPATASRALAKNLLKKDRQDLLLCGIYGRIEAMNGDFVKARHIFDLALS
TSQGASEDLRKKVPILYFWYAEMELAIYASRNNSDSVDRAIHILSCLGDKAKYASFDGSI
SRPQVLKARQGFKEQIRSLRSSFASDGMKEESVALICSASLFESMTSGFASGLEVIEETF
YMTPSENNHSLEFEELWMHYIKQLQKNLNQLSLSRVWPKISQGIQTYPYNPKSYAAMLTL
GCLYSVSNNLRLTLDKFNQRDPSIIGLLFALSFELCKAGSDNRIHNLFERALTDDKLQKS
VLLWRCYLAYEAEIACNASAARRVFFRAIHACPWSKRLWLDGFEKLSSILTLKELSDLQE
VMRDKELHIRTDIYEILLQDETDT
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggagccatcgccggagattccgccgccgccacccgccttcgccgccggcggagaaggc
gatccgcatgctcacaccacagccgccgcccgctcctcctcctcctcctctctatttcct
ctcttccccctctcggcgcccgaggaatcctccgcccccgcggcggggtcccagtggctc
tcaaaccctagcttctccttcgacgcctcctccctcaacatccccgccactgcctcctca
tccgtaccgccgccgctaagcgcctcgtcggacgaagaggaggcgccacggcccgcacct
gctaagtatgacctgctgccctactcgccgtcgcctccggcctccgacgaggagaggagg
gacagacggaaggataggaagaggaggaagcggaggcgggagaaggagcggtacaatagc
gcggaagcctcgcgaaagccgggggttcgcgcttgggctgggtcggagacgaagttggct
aaggattactacttcgacgccaagggcgaccaggataacttggcgtttggatcgatatac
agaatggatattgcacgctacaagtctcaaaacatgccagaggcacgtggtctaaaacgg
cttttgtttcataacttgggtgtctcggtacatatgggtcatgagtcagatttagatgga
ctggatagcaaagcaagagctggaggtcgctactactcggcgaaatatgcagttgtagaa
agaaataagggtttcaaacacctaaaagtattgaaaaaggataactctgcaattctccca
gaagattttatccccctagggataccatctcttcctgaaaataacactactggggaacag
gaacttgaagaatcttgggaagatgaaatacttcggaggacacgagaattcaacaagatg
tctcgggagttccctcacaatgagaaaatttggttggactttgcccgattccaggataaa
gttgccagtactcaacctcagaaagcagcccgtttgcaaacaactgaaagaaaaattagt
atattggaaaaagctgtagagcttaatccagataatgaagaattattgctttgtcttctg
aaggcatatggtgagagggatagcacccagaatctcctggataaatgggagcagatactc
atgaaacacccggatagttgtaagttatggaaacagtatctacttctgtgtcaaggggaa
ttctccagattcaaagtatctgacctacggaagtcttacgcttatgcagcacaggcttta
tctgcagcttgtactaagctatgtaggcaggatacacaatatgatcgtctcgaacctaag
tattcttccttaattcatcttgaactcggtctagtggatatatttgtgaatttgtgtcgg
ttcgaatggcatactggacatcgggaattagcaactgcactatttcaggctcaaatagaa
tttagtttattctcccctccccttcatctgaccacaagcagtaagcaaagactctttgag
cacttctggaacaatggtggtgctagaatcggagaagatggggctcttggatggtccaga
tggttggcaaaagatgaggagagtagacaaaatatagatatacaagaaaatacccaagaa
actgaaaggggtggttggagtggttggtttgatccttctctaaggactaatagtgaaaca
agcaaagtggaaccatcgacatctgatggaaatgatgcagaaaatccagatgatgaggac
ccatctgcacaagaagatgttgaatctttgctgaaaaagcttgggattgatggagatgct
gattacaatagtgaagttaaagatccaaaaacgtggaatagatggtcatttatggagtta
tcaagggataatgaacaatggatgcctcttcatgaaaaacttggatcactttattctgat
gatgctccaactggagaagacaatgatcagctttccagagtaattttgtttgaggatata
actgagttcctgttctctctatcttctgaagaggctcgcttttctttgatatgccaattc
attgatttctatggtggaaaaatttctagatggacatccaccaacagttcaagttggatt
gataggattttgagcctagagatgattacagatgacattcaggaagatcttagtacggtg
tctaaccttatagacaagaaccaaacttcagttcataataaaatggtgtcattgttagga
actatgcatgaattttctcaaaggcctggcactgcgaaatttctgaaaaatgcaatattg
cttttccttgatgtattccctcgtaatcatatcctggaggaagctgttcttgttaccccc
caaattcatacagctcaagaaaaatctctggctactccagccaccgcatcccgggctttg
gccaaaaatctattgaagaaagacagacaggaccttttgctttgtggaatatatggacga
attgaggctatgaatggggactttgtcaaagcaaggcatatattcgacttggcactatca
acttctcaaggagcttcagaggatctcaggaagaaggttcctattctttatttttggtat
gctgagatggagctagcaatatatgcttcaagaaacaattctgactctgtggatcgtgca
atccacattctgtcctgcttaggggacaaggcgaagtatgcttcttttgatgggtctata
tcacgacctcaggtgttaaaggctcgtcaaggatttaaagagcagattagaagcttgcga
tcttcatttgcaagtgatggtatgaaagaagagtctgttgctctaatctgctcagcatct
ttgtttgagagtatgacatctggttttgcttctggtcttgaagttatagaagagaccttt
tatatgacaccttcagagaacaaccatagcttagaattcgaagaattgtggatgcactac
atcaagcagcttcagaaaaatcttaatcagttgagtctctcaagggtttggccaaaaata
tcgcaaggaatacaaacatatccgtacaacccaaaatcatatgcagccatgttaactcta
ggttgcctttacagtgtttccaataatctacgtctcacactcgacaaatttaatcaaagg
gatccttccataattggcttgctctttgctttgtcctttgaattgtgcaaagctggatca
gacaatagaatacacaatctgtttgagagagctctgactgatgataagttacagaaatcc
gttctgttgtggcgctgttatctagcttatgaggcagagatagcttgcaatgcttctgca
gctcggcgtgtgttcttcagagctatacatgcctgtccatggtctaaacgattatggctt
gatggatttgaaaaactgagttcaattttgacactgaaagagttgtcagatctccaagaa
gtaatgcgtgacaaggaattgcacattcgaactgacatttatgagatactcctgcaagat
gaaacagatacgtga
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