Oryza glaberrima (African rice): 127762708
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Entry
127762708 CDS
T08853
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127762708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127762708
03110 Chaperones and folding catalysts [BR:
ogl03110
]
127762708
03029 Mitochondrial biogenesis [BR:
ogl03029
]
127762708
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogl04147
]
127762708
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
127762708
Messenger RNA biogenesis [BR:
ogl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
127762708
Chaperones and folding catalysts [BR:
ogl03110
]
Heat shock proteins
HSP60 / Chaperonin
127762708
Mitochondrial biogenesis [BR:
ogl03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
127762708
Exosome [BR:
ogl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127762708
Exosomal proteins of other body fluids (saliva and urine)
127762708
Exosomal proteins of breast cancer cells
127762708
Exosomal proteins of colorectal cancer cells
127762708
Exosomal proteins of bladder cancer cells
127762708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
YIEGIA_cap
DUF7342
Motif
Other DBs
NCBI-GeneID:
127762708
NCBI-ProteinID:
XP_052143141
UniProt:
I1NWB6
LinkDB
All DBs
Position
2:156761..161528
Genome browser
AA seq
598 aa
AA seq
DB search
MASAFGSTSACGIKITPTAFATKKHLCLVPPPVVSLPRKNRPQRKCNFRVNAAKELYFNK
DGLAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVEN
IGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKVVAAGANPVQITRGIEKTAKALV
SELQKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMNKVGRQGVVTLEEGKSAENNLYV
VEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKINNARDLITILEDAIRGGYPILI
VTEDIEQEALATLVVNRLRGALKIAAIKAPGFGERKSQYLDDIATLTGGTVIREEVGLSL
DKADRDVLGTAAKVVVTKDSTTIVGDGTTQDEVNKRVTQIKNQIEAAEQEYEKEKLNERI
AKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAI
IETLENDEQKVGAEIVRKSLSYPLKLIAKNAGVNGSVVTEKVLANDNFRYGYNAATGKYE
DLMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKEPEKAAAAGNPMGGSGFGF
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcattcgggagcacctcagcatgtggcatcaagatcactcctaccgctttt
gccaccaagaaacatctttgcctggttccacccccagtcgtttcacttccccggaaaaat
aggcctcagaggaagtgtaatttcagagtaaatgctgccaaagagttatatttcaacaag
gatgggttggctatcaagaagctgcaaaatggagtcaataagcttgctgatctcgttgga
gtcacccttggtccaaaaggacggaatgttgtccttgagagcaagtatggatcacctaaa
attgtcaatgatggtgttaccgttgcaaaggaggttgagctggaggaccctgttgaaaat
attggagccaaattagtccggcaagctgcagccaagacaaatgatttggctggtgatggg
acaacgacttctgttgtccttgctcaagggatgatcacagagggtgttaaggttgtggct
gctggtgctaatccagtacagattacccgtggtatagagaaaacggccaaagcacttgtg
agtgaactccaaaaaatgtccaaggaggttgaagacagcgaacttgctgatgttgctgcg
gtaagtgctggaaataactacgaaattggcaacatgatagctgaagctatgaacaaggtt
ggccgacagggggtggtcacacttgaagaaggaaagagtgctgaaaataatctctatgtt
gttgagggaatgcaatttgatcgcggctatatttctccctactttgtaactgacagtgaa
aaaatgtcagtggagtatgagaattgcaagctgctccttgtggacaagaaaatcaacaat
gccagagatcttataacaattctggaggatgctattaggggtgggtacccaatcctaata
gttacggaggatattgagcaggaagctcttgcaactcttgtggtcaacaggcttaggggt
gcattgaagattgctgctattaaagctcctggttttggagaacgcaagagtcaatacctt
gatgatattgctactcttactggaggtactgtcatcagggaagaagttggcttgtcccta
gacaaagctgatagagatgttctaggaacggccgccaaggttgtagttaccaaggattca
acaacaatagttggggatggtactacccaggacgaagtaaacaaaagggtgacacaaatc
aagaaccagattgaggctgctgaacaggaatatgagaaagaaaaactgaatgagagaata
gctaagctctctggtggtgttgctgtcatccaggtaggagcacagacagaaactgagctt
aaggaaaagaaactgagggttgaagatgcactgaatgcaaccaaggcggctgttgaggaa
ggtattgttgttggaggtggctgtacgcttttgcggcttgcatcaaaagttgatgccatt
atagaaacacttgagaatgatgaacagaaggttggggctgaaatcgtaaggaagtccttg
agctacccacttaaattaatagcaaaaaatgctggtgttaacggcagtgttgttactgag
aaggtccttgccaatgataacttcaggtatggttacaatgccgctacaggaaaatatgag
gatttgatggctgctggtattattgatcccaccaaggtggtgagatgttgcttggagcat
gctgcgtcggtggcgaaaacattcatcacatcagatgctgttgtggtagacatcaaggag
cctgagaaagcagctgctgctgggaacccaatgggtggatcaggttttggattttag
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