Oryza glaberrima (African rice): 127763328
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Entry
127763328 CDS
T08853
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127763328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127763328
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127763328
mRNA degradation factors
5'-3' decay
Decapping complex
127763328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
DUF445
DUF244
Motif
Other DBs
NCBI-GeneID:
127763328
NCBI-ProteinID:
XP_052143955
UniProt:
I1P3R3
LinkDB
All DBs
Position
2:complement(28991630..29001400)
Genome browser
AA seq
1339 aa
AA seq
DB search
MATPTGNPNPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPP
FHRAPFLHYPQDPMAAPHMPRPVISFPMPTPNPAAIPSAAAAAAAAAGPSQNHGARLMQL
LGSSGPAHLDSSASMPPPASEFAAAQPPQPIPAMPSAPPARMLSSTSSKMPRGRLLGGGD
RAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNI
NTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEDSKPQITGKIEI
AIQIVGDAESYHPRICWHSHKQEILFVGIGNCVLRIDTTKVRRGRDVSAEEPIKCHLDKL
IDGVRLVGKHDDDVTDLSLSQWMTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYS
VAFLTAPEHPDHINLVTAGPLNREVKIWASANEGGVLLPSDSETWNCTQTLELVSSLEPR
VEEAFFNQVTVLPQASIILLANAKKNAIYAVHVEYGTDPASTRLDYIADFTVAMPILSLT
GTHESQPGNDQVVQVYCVQTMAIQQYGLDLSLCSPPTSETTGLGRDPSISRVHETPLEVV
GAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPKPSAPPLTYTEGDGSVHLPSASLASNM
DPSGSGSSLGNLEMDQPAFDYAMNRNVEPKILTRQDTPMPKDNFGKDDPRDGRNDVTMLP
NPHLMFKVGGNTTHLVTPSEIISGALSSAESNHVPKSDGVKIQDGTSSGHQMAEVEPKHT
NEHTSDQNLDLEVAQVVCENTKQAGSSEQTVKMISERSVTTDKYSVEESQTSCDRSISER
TGAADESVTKKPVEVPEKSDYSSASVEQSSSYTKKEKIMHPQASGQSSPSTSAFNSTESS
HEPPSSAYPPINSFPEVTTQGMLQQLIAMHKDLQKQLGTIVVAPLAKEGKRIEASLGRTM
EKSIKANLDSLWVRIQEENAKREKAERERMQQMITLITNSISKDLPATLEKSLKKEISSL
GPVIARAITPIIEKCSASAVADSIQKVVGDRVVNQLDKSVSAKLEATVARQIQMQFHTSV
KQTLQDALRASLEAFLVPAFEQSCKTMFEQVDSAFQKGMSEHTVAIQQQVEAAHTPLAQT
LKDTISSASSITQNLTAELLDGHRKLLALLASGNAKAHSTNVLQPNNVPVTGPPEVEAPL
DPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCSMVPVPLNQGVLLALL
QQLAVDIATDTPRKIQWMTDVAMAINPTDPVIAMHVKPIFEQVYNALLHLRSLPTTSPSD
STSIRLFMHVINSVLLSYK
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgaccggaaaccctaatcctaaccccaaccctagcactcccttcgaggtc
agcatgctgttcaagccgccctccaacgcccccgcggccgcccccatcttccccggcggc
cccgccgcgggcccgccgccgccgtccgccgcgtactcctacccgcctgcgactcccccc
ttccaccgcgccccgttcctccactacccgcaggaccccatggcggcgccgcacatgccc
cgccccgtcatctccttcccgatgccgaccccgaacccggccgctatccccagcgccgcc
gccgccgccgccgccgccgcggggcccagccagaaccacggcgcgcgcctcatgcagctc
ctggggagctccgggccggcccacctcgattcctccgcctccatgcccccgccggcgtcg
gagttcgccgccgcgcagccgccgcagccgatccccgcgatgccgtcggcgccgccggcg
aggatgctgagcagcacgagcagcaagatgccgcgggggcgccttctcggcggcggggac
agagcggtgcacgacgttgactcgaggctgccgggggaggcgcagccgccgcagctggag
gtgacgccgatcaccaagtacacatcggatcccgggctcgtgttgggcaggcagatcgcc
gtgaacaggacgtacatcgtgtatgggcttaagctcgggaacatccgcgtgctaaacatc
aacaccgcgctccgttcgctccttcgtggccacacacagagggtgacagatatggctttc
tttgctgaggatgttcatcgtttagcaagtgcaagtgtagatggtcggatatatgtttgg
aagattgatgagggtcctgatgaggacagcaaaccacaaattacaggaaagattgaaatt
gccatccagattgttggcgatgctgaatcttaccatccaaggatctgttggcactctcat
aagcaggagattctgtttgttggcattggaaactgtgtcttaagaatagacacaactaaa
gtgcgacggggaagggacgtaagtgcagaggaacctatcaagtgtcatcttgacaagctc
attgatggtgtgcgcttagttggtaagcatgatgatgacgttacagatttgtccttatct
caatggatgactacccgactggcttcaggatcaaaagatggcacggtaaaaatttgggat
gatcgcaagccagtgcctctatcgattctgaagccacatgatggtcaagctgtttattct
gttgcttttctcacggcacctgagcatccagaccatataaacctcgttacagcaggtcct
ctaaaccgagaagttaaaatttgggcttctgccaatgaaggaggtgtgttgttgccaagt
gattccgagacttggaattgcacacagacattggaacttgtcagttcactggaacccagg
gtagaggaggcatttttcaaccaagttaccgtgctgcctcaagcaagtattattttactt
gcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggcacagatcctgct
tcaactcgcttggattatatagcagattttacagttgcaatgcctattttaagtctcact
ggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttattgtgttcaaaca
atggctatccagcagtatgggctggatttatcactctgttcacctcctacaagtgaaact
actggacttggaagggatccatctatttctcgtgttcacgagacacctctggaagtggta
ggagcagagtcatccatgccaactagcttcaccgattcttattccgtcggttctccaagt
aaatcatcaaccgttgatcaacagtctgaacttgatcctaaaccatcagctccaccactt
acatacacagaaggtgatggttctgttcatcttccatcagcctctcttgcatcaaacatg
gacccttctggatcaggatcgtcactaggtaaccttgaaatggaccaaccagcttttgat
tatgcgatgaacagaaatgtggagcctaaaattttgactaggcaagatacacccatgcct
aaggacaactttggaaaggatgatccaagagatggtcgcaatgatgttacaatgcttcca
aatcctcatttgatgtttaaggtaggagggaacactacacacttggtaactccatctgaa
atcatatctggcgctctatcttcagctgagagcaaccatgtccctaagtctgatggagtg
aaaatccaggacggcacaagtagtggtcatcagatggcagaagtagaaccaaaacatacc
aatgagcacacatctgatcaaaatttggaccttgaagtagcacaggttgtttgtgagaat
acaaagcaagctggttcatcggagcaaactgttaaaatgattagtgagcgctcggtaaca
actgataagtacagtgtggaagaatcacagacatcatgtgatcgatccatttctgagcgt
actggtgctgctgacgaaagtgttacaaaaaaacctgttgaagtgcctgagaaaagtgat
tattcctctgcttctgtggagcaatcatcttcatataccaagaaggagaaaattatgcat
cctcaagcatctgggcagtcatctccttctacaagcgcattcaactcaactgagtcttca
catgaacctccgagtagtgcataccctcctatcaattcatttccagaagttactacgcaa
gggatgcttcaacagctcatagcaatgcataaggacttgcaaaagcagttgggtactatt
gttgttgcacctcttgcaaaggaaggcaaaagaattgaggcatcattagggcgcaccatg
gagaaatctatcaaggctaaccttgattccttgtgggttcgtatccaggaggagaatgca
aaacgagaaaaggctgaaagagagcgaatgcagcaaatgattactcttatcactaattca
ataagcaaggaccttcctgctactttggagaagtcactgaagaaagaaatttcttcactt
ggacctgttattgcacgggcaataacacctattatcgagaagtgttcagcctctgcagtt
gctgattcaattcagaaagtggttggtgacagagtggtgaatcagctggacaagtctgtt
agtgcaaaacttgaagctactgttgctagacaaatccaaatgcagttccacacatctgta
aaacagacccttcaggatgctttacgtgctagcctggaagctttccttgttccagcgttt
gaacaatcttgcaagacaatgtttgagcaagtcgatagcgcattccagaaaggaatgtct
gaacacactgttgctattcagcagcaagttgaggcagcacataccccattggcgcaaact
ttaaaggataccatctcttctgcgtcttcgatcacccagaatcttacagcagagttgctt
gatggccatcgcaaactattggcgctgcttgcatcgggcaatgcaaaagcacatagtaca
aacgttttgcagcccaacaatgtccctgtgactggtccaccggaggttgaggctccatta
gatccaatgaaggagttgggcagactgatatctgaacgcaaatttgacgaggcatttaca
atggctcttcaaagaagtgacgtgtcgatagtgtcttggttgtgctctcaggttgatttg
cgcgcattgtgctcaatggtccctgtcccccttaaccagggggtcctcctagccctattg
cagcagctagcagttgacattgctactgatacgccgcggaagattcagtggatgacagat
gtcgctatggcgataaatccaaccgatccggtgatcgccatgcacgtgaagcctattttc
gagcaagtctacaatgcattgctccacctacgctcgctccccaccaccagcccatcagac
agcaccagcatccgcttattcatgcatgtaattaattctgttctgcttagctacaagtga
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integrated database retrieval system
