Oryza glaberrima (African rice): 127763867
Help
Entry
127763867 CDS
T08853
Name
(RefSeq) probable diaminopimelate decarboxylase, chloroplastic
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl00300
Lysine biosynthesis
ogl00470
D-Amino acid metabolism
ogl01100
Metabolic pathways
ogl01110
Biosynthesis of secondary metabolites
ogl01230
Biosynthesis of amino acids
Module
ogl_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
127763867
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
127763867
Enzymes [BR:
ogl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
127763867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Pox_Rif
Motif
Other DBs
NCBI-GeneID:
127763867
NCBI-ProteinID:
XP_052144627
LinkDB
All DBs
Position
2:complement(13684959..13692468)
Genome browser
AA seq
490 aa
AA seq
DB search
MAAANLLSRALLPALNPNPSSHSNRVSPSAVSLRRRHGLTASVRASLSTAAPSPPPRPAA
AAADGRAPKRCFRRGADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEG
LRSIVGYAVKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLED
LVLAAESGVFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKF
GIRNEKLQWFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRAQGFE
LEYLNIGGGLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANTCCFVNR
VTGVKSNGTKNFIVVDGSMAELIRPSLYGAYQHIELVSPSPDAEVATFDIVGPVCESADF
LGKDRELPTPDKGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEDDGSIAKIRRGESFDD
YMKFFDNLSA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaaccttctctctcgcgcgctcctccctgctctaaaccctaacccaagc
agccacagcaaccgcgtcagcccttcggccgtatctctccgccgccgccacggcctgacg
gcctccgttcgcgcctctctctccacggcagcgccgtccccgccgccgcggccggcggcg
gcggcggccgacggtcgggcgccgaagcgctgtttccggcgcggcgccgatgggcacctg
tactgcgagggggtgagggtggaggacgcgatgggggcggcggagcggacccccttctac
ctctacagcaagcctcaggtggtgcggaacttcaccgcctaccgcgacgccctcgagggg
ctccgctccatcgttgggtacgccgtcaaggccaacaacaatctccgcgtgctgcagctc
ctgcgggagctcggctgcggcgccgtcctcgtcagcgggaacgagctccgccttgccctc
cgggcaggattcgatcccactaggtgtatatttaatggaaatggaaagacattggaagat
cttgttttagctgcagagagcggagtgtttgtaaacatagacagtgaatttgatttggag
aatattgtcactgctgcgagagttgctgggaagaaagtccctgttttgctcaggataaac
ccagatgtggatccacaggtccatccttatgttgcgactggaaacaaaacctccaaattt
ggtatccgtaatgagaaactacaatggttcttagactctatcaagtcatactcaaatgat
atcacactggtgggtgttcattgtcatctgggatctaccattacaaaggtcgatatattt
agagatgcggcaggtcttatggtgaattatgttgatgaaattcgagcacaaggttttgaa
ctggaatatctcaatattggcggtggcctgggcatagattatcaccacacggatgcagtc
ttgcctacacctatggacctcatcaacactgtgcgagaattagttctgtcacgagatctt
acactcatcattgaacctgggagatccctcatagctaacacttgctgcttcgtcaatagg
gtcactggtgttaaatctaatggtacaaagaatttcattgtagttgatggcagcatggca
gagcttatcagaccaagtctatatggagcataccagcatatcgaactggtttctccttcc
ccagatgcagaagtagcaacattcgatattgttggaccagtttgtgaatctgcagatttc
cttggcaaagacagggaacttccaacacctgataagggagctggtttggtggttcatgac
gcaggagcctactgcatgagcatggcttcaacctacaacttgaagttgcgaccacctgaa
tattgggtagaagatgatgggtccattgctaagattcggcgtggagagtcatttgatgac
tacatgaagttctttgataatctctctgcctaa
DBGET
integrated database retrieval system
