Oryza glaberrima (African rice): 127763995 Help Entry 127763995         CDS       T08853                                  Name (RefSeq) THO complex subunit 2 isoform X1   KO K12879   THO complex subunit 2 Organism ogl  Oryza glaberrima (African rice) Pathway ogl03013   Nucleocytoplasmic transport ogl03040   Spliceosome Brite KEGG Orthology (KO) [BR:ogl00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     127763995   09122 Translation    03013 Nucleocytoplasmic transport     127763995  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ogl03019]     127763995    03041 Spliceosome [BR:ogl03041]     127763995 Messenger RNA biogenesis [BR:ogl03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      127763995 Spliceosome [BR:ogl03041]  Complex C   Other components    EJC/TREX     127763995  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     127763995 SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Tp0624_2nd PDZ_3 Motif Other DBs NCBI-GeneID:  127763995 NCBI-ProteinID:  XP_052144762 LinkDB All DBs Position 1:complement(36665240..36680859) Genome browser AA seq 1779 aa AA seqDB search MSPPLQAPDYKHVTEECLREWKGQPAAAAAFRVPDPVPMARFLYELCWAVVRGDLPPQKC RVALDSVEFVEEAQRGEVGSVLADIIAHLGQDVTISGEYRSRLVKMTKSFVESSLIAPRL LQERCEEEFLWEVELSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQ IGSDLACQNSSSVTMSIIKSLIGHFDLDPNRVFDIVLECFELYPDNTIFCQLIPLFPKSH AAQILGFKFQYYQRLDVNSTVPPGLFRIAALLVKSGFIDLDSLYAHLLPNDDEAFEHFDS FVTRKIDEASNIGKINLAATGKDLMDDEKQEITIDLYTALEMENDIIDERAPEIEKNQKL GLLLGFLSVHDWDHAQLLFERLARLNPVEHVEICDSLFRLIERSISSVYDIIFQTHYKMP RNPVYMMDTSPSSSQSFSVDPPKEFFQMLSACGPYLHRNTQLFQKVCRVLKAYHLSAKES IRTAGVMSPDSRIEEALGSCLLPSLQLIPANPAVDMEIWGVLSLLPYETRYRLYGEWEKD TEQNPIVLAARQTAKLDTRRLLKRLAKENLKQLGRMVAKLAHANPMTVLRTIIQQVEAYR DMITPVVDAFKYLTQLEFDILQYIVIERLAQGGREKLKDDGLNLSDWLQCLASFWGHLCK KHHSVELRSLFQYLVNQLKKDTGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLR LQASSLFGSTRNSKVLTKSTNKLRDSLLPKEEPKLAIPLLLLIAQHRSKIIINADATYIK MVSEQFDRCHGILLQYVEFLSTAVTPTTYVQLIPPLEDLINKYHIEPDVAFLIYRPVMRL FKSTNGGDTCWPLDDNEEGESVSCDDLILHPDTSHKSIMWSDLLSTVRNTFPAKTWNGLS PDLYATFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDL LDKLNNESHKHQQHIASVLQRLGREKVKWLNSSPDALKINMEFFQRCIFPRCVFSMQDAV YCAMFVQTLHSLETPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYRW KSDESLYERECGNKPGFAVYIRYPNSQRVSYSQFVRVHWKWSGRITKVLNQCMESKEYME IRNALIVLTKISSIFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLS EEEFGMGLLDLKQGPAKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQKKN VLATNGSDNQMPSSSAQGKVSGVIRGSDEPPKLLSDEGVKVSKPTAESETRVPQKRVAHN AGKVSKHDMVKEDTKSGKSTNRGVTQQGSSVPVDKEVLSQAADGVQDTTSNSLAASNGNL HMAPRKVSASSQKSTLLATHTGGAANSSGESTDLIDSNMKQQKRFVPTEEQDRGTKRRKG ESEGRDGDFTEHTDKDKNLDSRLVDKFRSMDHEKSASEEQILSRPEKSKEKADDKYDRDP REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDWDRDKSSIVKDESDPNS ASKRRKIKRDQSGLEAGEYAPSAPQLPSHGTSSSQVFETRERERKGAISQHRISHADDLP RIHGKDSSKTSRREADQVHEREWEEEKRSRTETKRKHRK NT seq 5340 nt NT seq  +upstreamnt  +downstreamnt atgtcgccccctctccaggcgcccgactacaagcacgtcacggaggagtgcctccgcgag tggaagggccagcccgccgccgccgccgccttccgcgtccccgatccggtccccatggcg cgcttcctctacgagctctgctgggcggtggtgcggggggacctgccgccgcagaagtgc cgggtggctctggactcggtggagtttgtggaggaggcgcagcgaggggaggtcggctca gtactcgccgacatcatcgcccacctagggcaggatgttacaatctctggtgaatatcgc agccgtcttgtcaaaatgaccaaatcatttgtggagtcgtcattgattgcgcctaggctc cttcaagagcgatgcgaggaagagttcctctgggaggttgaactgagtaagtcaaagggg caggatttgaaggctaaggaggtcagggtcaacacacgtctcctttatcagcaaactaaa ttcaaccttttaagagaggaaagtgagggctacgccaaattggtaaccctcctttgtcaa attggttcagatttggcttgtcaaaattcttcttcagttactatgagcattataaagtca ttgattgggcattttgacctggacccaaatcgtgtgtttgatattgttctggaatgtttt gagctctatccggataataccatcttttgtcagcttatacctcttttccctaagtcccat gctgctcaaatattggggttcaagttccaatattaccaacgattggatgtcaacagcact gttccacctgggcttttccggatagcagctttgttggtcaaatctggttttattgacctt gatagcctctatgctcatttacttccaaatgatgatgaggcatttgagcattttgactcc ttcgtcacgaggaaaatcgatgaggctagtaatataggcaaaataaatcttgctgccact gggaaggaccttatggatgacgagaagcaagaaataactattgatttgtacacagcattg gagatggaaaatgatataattgatgagcgagcccctgagattgaaaagaaccagaaactt ggacttcttcttggtttcctgtcagttcatgattgggatcatgcacaactcctctttgag cgtcttgcacgcctaaatcctgttgagcatgttgaaatttgtgatagtttatttagactt atcgaaaggagtatttcttcagtctatgatataattttccaaacacattataagatgcct cgtaaccctgtttatatgatggacacatcaccttcctcttcacaaagtttttcggttgat ccgccgaaagagtttttccaaatgctttctgcttgtggaccataccttcatcgtaacaca caattatttcagaaggtttgcagagtacttaaagcgtaccatctgtcagcaaaagagtca atccgtacagcaggtgtaatgtctccagactcgcgaattgaagaagcacttggatcgtgc ttgctaccatcattgcagcttatacctgcaaatcctgctgttgatatggagatatgggga gttctttctcttcttccttatgagacccgttatcgcttatatggtgaatgggagaaggat accgaacaaaacccaattgtccttgctgcaaggcaaactgcaaagttggataccagaagg ctcttaaagcggcttgctaaggaaaatctgaagcaacttggccgcatggtggctaaactt gcccatgcaaatccaatgacagtacttcggacaattatccaacaggttgaagcatatagg gacatgataactccagttgtcgatgcttttaaatacttgactcagctggagtttgacatc ttgcaatatattgtaattgaacgcttggctcaaggtggccgtgagaaacttaaagatgat ggtcttaatctatctgattggcttcagtgtcttgcatcattttgggggcacctgtgcaag aagcatcattcggtggagctaagaagcctttttcagtaccttgttaatcagctgaagaaa gacacaggcattgagcttgttgtactcgaggaactcattcagcaaatggcaaatgtgcaa tacactgagaacatgactgaggagcaggttgatgctatggcagggagtgaaacattgcgg cttcaagcttcatcactatttggatcaacaagaaattctaaggttctgaccaagtctaca aacaaattgagggattctttgcttccaaaagaagaacctaaacttgccattcccctttta ctgcttattgctcagcatcgatccaagattataattaatgctgatgccacatatatcaaa atggtcagtgagcagtttgatcggtgccatggaatactacttcagtatgttgagtttctt tcaactgcagtaactccaacaacttacgttcaactaatacctccgctggaagatctgatt aataagtatcatatcgagcctgacgttgcttttcttatataccgacctgtgatgagactt ttcaaaagcactaatggaggtgacacctgttggcctttggatgacaatgaagaaggggag tctgtatcatgtgatgatctgatattgcatcctgacacatctcataagtcaatcatgtgg tctgatcttcttagcacagtccggaacactttcccagcaaaaacctggaatggtttatca cctgatttatatgctactttctgggggttaacactatatgatcttcatttccccaaagat cgttacgatgcagaaataaagaagctgcatgaaaatcttaaacaactggaagataattcg gataactctagtattgcaatctcacgacgcaagaaggacaaggagagaatccaagatttg cttgacaaattgaacaatgaatcacataagcaccaacaacacattgcatcagtgctccaa aggctaggtcgtgaaaaggttaagtggttaaattccagtccagatgctctgaagatcaac atggaatttttccagcgctgcatattccctcgctgtgtttttagcatgcaagatgctgtg tattgtgctatgtttgtccaaacactgcactcactcgagactccatttttcaacacggtg aatcatatcgatgttttcatctgcaaaactctacagccaatgatttgttgctgcacagag tatgaggctggcaggctgggaaggtttcttcatgagacactgaagatggcctaccgttgg aagagcgatgaatctttatatgagcgtgaatgtggaaataagccaggtttcgctgtgtac atcagatatccaaatagccagcgtgtatcttatagccagtttgttcgagttcattggaag tggagtggaagaataactaaggtgctgaaccagtgcatggaatcaaaagaatacatggaa atcagaaacgcccttattgtgctcacaaagatatctagcatttttcctgtgatacgcaaa agtggagtcaatcttgagaaacgtgttgctaagctgaagggggatgaaagggaagatctg aaagttctggcaactggtgtagctgctgctttggcagcccgcaagagttcatggctatct gaagaagagttcggcatgggtctccttgatcttaagcaagggccagcaaaaattgtgcct ggaaatcaatcagcagatcctttgacagcaaaagatcagagtgttcgtgcaaaatccatt gagggtaggcatgaacggtcagaagctgccatgaagcctgatgctcaacaaaagaaaaat gtcttggctacaaatggatctgataaccaaatgccatcttcttctgcacaaggaaaagtt tcaggggttatacgaggttctgatgaacctcccaaacttctatctgatgagggagttaag gtttcaaagcctactgcagaatctgagacaagggtgccccaaaagcgtgtggcacacaat gctggcaaggtatctaagcatgatatggtaaaggaagatacaaaatctgggaaatctaca aacagaggtgttactcaacaaggctcctctgttcctgttgataaagaagtattgtctcag gctgctgatggtgtgcaagataccaccagtaattctttggctgctagcaatggtaactta catatggctccacggaaggtatcagcatcctcccaaaaatcaacactgttggctacacat actggtggagcagctaattcctctggtgaatctactgacttgattgactctaatatgaaa cagcaaaagaggtttgttcctactgaagaacaagatagaggaactaaacggaggaaagga gagagtgaaggccgggatggtgacttcacagaacacactgacaaggacaaaaatttggac tcgcgattggtagataaatttcgttccatggatcatgagaagagtgctagcgaggaacaa atcctaagtaggccagagaaatcaaaagaaaaggctgatgacaaatatgaccgggatcct agagaaaaagcagatcgaactgagaggcgtcgaggggaagacatcgagagaccaacagac aaatcattggaaaggagagagcgttctattgaaagaatgcaagaaagagggacagataga gctcctgataaaggaagagaagacaggaataaggaggagagaaataaagttaagcatgct gaaccatccatagatcgtgcacatccttctgatgaacggttccgaggacaaagcttgcca ccacctccaccccttccagcaagttttgtaccccaatcagttggtaacaggagagatgaa gataccgatcgaaggggtggtagtactaggcataaccaacgatcatctcctaggcgtgat gataaagaaaagtggcacttggaggacaatgctgcgtcgctgcaggatgatggaaagcac cggagagaggaagatattcgggacagaaagcgtgaagatagggatgtttcgtcaagcaag gtagatgactgggatagggacaaaagtagtattgtgaaggatgaaagtgatccaaatagt gcttccaaacggcgaaagatcaagagagatcagtctggtttagaagctggggaatacgca ccttctgctccacagcttcccagtcatggaaccagtagctcacaagtgtttgaaacacga gagcgagaacgaaagggggcaatttcacagcatcggatatcccatgctgatgaccttcct agaatacatggaaaggactcgagtaagacaagtcgtagagaagctgaccaagtacatgag agagaatgggaagaggaaaagcgatcaagaacggaaactaaaaggaagcaccggaagtag

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