Oryza glaberrima (African rice): 127764087
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Entry
127764087 CDS
T08853
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127764087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogl03036
]
127764087
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
127764087
SWR1 complex
127764087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
127764087
NCBI-ProteinID:
XP_052144872
LinkDB
All DBs
Position
2:complement(27339440..27353173)
Genome browser
AA seq
2044 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPRGEPRRTKTHWDHLLGEMAWLAKEFDAERKWKLSM
AKRIAQRANKGVVDQATKDERKQKEEEVRLRKVALNISKDVKKFWTKIEKLVFYKNQLEL
EERKKKALDKQLDFLLGQTERYSTMLAENLVDVRLQNQENDSLQTNQRSQQELAQENINA
SSPTDVDNVEIDDDYNSSLGEEPEDDEHTIDEDEAQITEAERNEELAALQAEADLPLDDI
LKLYTKNKVSRESSPDGRDVFSDSDSKDLIKDPLNQANGCNDESDHTSSDEGISSEEADD
YQSYSEFVKKNTVKCNGNISSVDAKDDEDYVANDEGKDDEATLSEEEELAKKEDCDPLDE
VKLLQKESEIPLEELLARYQKDGYADDDTTELENSPALSVEDVNANMPVDDESADTVEVN
RDLSADTMKLTRDQSAETVKVNNDQSAEIVEGNNDTFEDHESAGMLGPEHVSGSVLQLET
SEPIVQENTVKEGDVTDTKAMANGDNSDVIADAAAAARSAQPTGNTFSTTNVRTKFPFLL
KHSLREYQHIGLDWLVAMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVV
PTSVMLNWETEFLKWCPAFKILTYFGSAKERKQKRQGWMKPNYFHVCITTYRLVIQDSKV
FKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMP
HVFQSHQEFKDWFCNPISGMVEGQDKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPQKHE
HVIYCRLSRRQRNLYEDFIASSETQATLASGNYFGMISIIMQLRKVCNHPDLFEGRPIIS
SFDMAGINMQISSSVGMVLDKGPFSQVDLSDMNFVFTQNEYNMTSWEEDEVAAIFSPSIT
LRGSGISRSTNDGQRSNGTNIFEEIHNSLWEERIKEANERAASIAWWNRVRCQKRPVYGT
NIREVLTIKHPVSDILEKKKNPLCHMEFSSSLADLVLSSVDRFKTMLDFIESFTFAIPAA
RAPAPLFWCNKGKSPVLIEPAYREKCMNEFSPVFSPIRPAIVRRQVYFPDRRLIQFDCGK
LQELAILLRRLKSEGHRALIFTQMTKMLDILEEFINLYGYTYLRLDGSTQPEERQTLMQR
FNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIY
RLISESTIEENILKKANQKRALDDLVIQRGSYNTEFFKKLDPMEFFSGHSSLHAENQQKD
CSLSAGPSNGTNLALSNVDVEAAIRQAEDEADYMALKRLEQEEAVDNQEFSEEAAGRLEE
DDLVNEDDTKPDEHTNEEHKYQCSDLVKDKHVALSINQLDEEKAITLAGGDGDIDMLADV
KQMAAAAAAAGQASSSFENQLRPIDRYAMRFLELWDPIIDKAAINYQVNVEEEEWELERI
EKLKEDLEAEIDEDQEPLSYESWDVDFATTAYRQHVEALAQKQLLEEQERQAREAAKELE
EKNDNSTQRKKSKKNKKKAAKFKSLKKGRLSSESEVMVEETSVDTMSIDDNAPSPELMSD
ESAHHYCNKHKRIMSTNEEENSNSRSLKKLKKAPKSSFSSEALSPKHFLEGKQLKLKDEL
NDSDPKSGARIKSDGRISVQCMPVKRVMVIKPERLKKKSLWSRDCASDSWTTEEDAVLCA
TVNEYGPLWELASDSLHSVPGGAFYRGRYRHPVHCCERFRELVCKHILSATDNSNSEKVP
SGTGKAILKVSEDQTQMLLNVISELPNNELLLQKHFMAVLSSVWRSKSARESHCVLSYSN
TLQKPGRLSENWSMTNFRPNFNLVRTALADAQVQCPRMVVPTSNHESRRNFLELELDFLT
DRDDYEADFPSVVNVSILEPEPLKHAVEPVEHSLLSTLSYRHAENRFRMVSETCFEGEGS
HWASSAFHTYDAGRHKSGPKSIGKHKASSESGRPPKSKIQRTTEPQEVPVTNNFHRIPGQ
LLHNSAEFHITQSLSDLGISDSEFTYFDNLPQEAETEFVPYQYDSDVLSGIEELDPLTDF
TDIG
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaggtcctcgatcaaagttagatcatgagacaagagccagacgccagaag
gctcttgaagccccaaggggggagcctcgaaggacgaaaactcactgggaccatcttctt
ggagaaatggcttggctggcaaaggagtttgatgctgagagaaaatggaagctgtccatg
gctaaaaggattgctcaaagagctaataagggtgtagttgaccaagcaacaaaggacgag
agaaaacagaaggaggaagaagttcgcctaagaaaagttgccctaaatatttctaaggac
gtgaagaagttctggaccaaaatagagaagctggttttttataagaaccaactggagctt
gaggaaaggaaaaaaaaggccctagacaagcaacttgatttcctcttaggacagactgaa
agatattcaacaatgctggcagaaaatcttgttgatgtgcgccttcaaaatcaagaaaat
gactctttacagactaatcaaagatcccagcaggaactagcacaagagaacataaatgca
tcaagtcctactgatgttgataatgtggaaatcgatgatgattacaacagttccttgggt
gaagagccagaagatgatgaacacacaatcgatgaggatgaagctcaaattacggaggct
gagcgcaacgaggaattggctgctttgcaggcagaagctgatctaccactggatgatatt
ctcaagttgtacactaaaaataaagttagcagggaaagcagtccagatggcagagacgtt
tttagtgactcagattcaaaggatttgattaaagatcctttgaaccaggctaatggatgc
aacgatgaatctgatcatacttcaagtgatgaaggcatttcttctgaggaagcagatgat
taccagtcttactctgagtttgtgaaaaagaacactgtgaaatgcaatggcaatatctca
tctgttgatgcaaaggacgacgaagattatgttgctaatgatgaaggaaaggatgatgaa
gctactttgtctgaagaggaagagttggcgaagaaagaagactgtgatcctctagatgag
gttaagttactgcagaaagagagtgagatcccacttgaagaacttcttgcaagataccaa
aaggatggctatgcagatgatgacacaacagaattggaaaattcacctgcactatcagtt
gaggatgtcaatgccaacatgcctgtggatgatgagtctgcagacaccgtggaggtaaac
agggatctttctgcagataccatgaaactgaccagagatcagtctgcagagaccgtaaaa
gtgaataatgaccagtctgcagagattgtggagggcaacaatgacacatttgaagatcat
gaatctgcaggcatgctgggacctgagcatgtcagtggtagtgttctacaactagaaaca
tcagagcctattgtacaggaaaatactgttaaagagggtgatgtaactgatactaaagcg
atggccaatggagataatagtgatgtgattgctgatgctgcagctgctgcaagatcagca
caaccgactggtaacacgttctcaacaacaaatgtgcggacaaaattccctttccttctt
aagcattctctacgagaatatcagcacattggactggactggcttgttgctatgtatgaa
aagaggctgaatggaattctagcagatgaaatgggtttggggaagacgattatgaccatc
tccttgctagcacaccttgcatgtgagaagggaatatggggtccacatcttattgtagtg
ccaactagtgttatgctaaattgggagactgaatttctcaaatggtgtcctgcgtttaaa
atactgacatattttggaagtgcaaaagagagaaaacagaaacgtcagggttggatgaaa
ccaaattacttccatgtatgcatcactacatacaggcttgttattcaggactccaaagtg
tttaagcgaaaaaaatggaagtatcttattcttgatgaggctcatttgataaagaactgg
aaatcacaaagatggcagactttactaaattttaattcgaagcgacgcattcttttaact
ggaactcctctacaaaatgacctcatggaactttggtctctcatgcactttttgatgcct
catgtatttcagtcacatcaagagttcaaggactggttctgcaatccaatttcaggcatg
gtagagggccaagacaaggtaaacaaagaagtgatagatcggttgcacaacgtccttcgt
ccgtttatacttcgtcgattgaaacgggatgtggagaaacagttgccacagaagcatgag
catgtcatatattgccgactttccagaaggcaaaggaacttgtatgaagatttcattgca
agctcagagacacaggcaacattggcaagtggaaattattttggcatgattagcatcatt
atgcagcttagaaaggtttgtaaccatccagatctttttgaaggccgtccaattatcagc
tcttttgacatggcagggatcaacatgcaaatcagctcttctgttggcatggtccttgat
aaaggcccattttctcaggttgacctgtcagatatgaattttgtatttactcaaaatgaa
tataatatgacttcttgggaggaagatgaggttgctgccattttttctccaagcataacc
ctcaggggttctggcatttctcgctctactaatgatggtcagagaagcaatgggacaaat
atttttgaagagattcacaattctttgtgggaggagagaataaaagaagctaatgaaaga
gcagcttccattgcatggtggaatagggtaagatgccagaagaggcctgtttatggcaca
aatattcgggaggttttgaccataaagcatcctgtgtctgatattctcgagaagaagaag
aaccctttatgccacatggaattttcatcaagcctagcagatcttgttctatcatcggtg
gatcgcttcaagacaatgcttgattttattgagtcatttacttttgcaattcctgctgca
cgagcgcctgcaccattattctggtgcaacaaagggaaatctcctgttcttattgaacca
gcatacagagagaaatgcatgaatgagttttctcctgttttctctcctataaggcctgcg
attgttcgccgtcaagtgtactttcctgacaggcgtttgatccagtttgactgtggaaag
ttgcaggaacttgctattttgttgaggcgtttgaagtcagaaggacacagggccttgata
tttactcagatgactaagatgcttgatatactggaggagttcattaatctatatgggtat
acgtatttgcggttagatggatcaacccagccagaagagaggcagacactgatgcagagg
tttaatactaacccaaagttttttctttttatcttatccactcgtagtggtggtgtggga
atcaacctagtaggtgcagacactgtcattttctatgatagtgactggaatcctgcaatg
gaccaacaggcccaagacagatgccacaggataggtcaaactcgtgaagttcacatctat
agactgatcagtgagagcactatagaggagaatatactcaagaaagccaatcagaagcga
gctcttgatgatctagtgatacaacgcggtagctacaatacagagttcttcaagaagctt
gatcctatggaattcttttctgggcactcatcacttcatgcagagaatcagcagaaggat
tgctctctgtctgctggaccctcaaacggaactaatctggcgctgtcaaatgttgatgtt
gaagcagctattagacaggcagaagatgaagctgactatatggctctcaagaggctggag
caggaagaggccgtggacaatcaagagttcagcgaggaggctgctggaagacttgaggag
gatgatcttgtaaacgaggatgacactaaacctgatgaacacaccaatgaagagcataaa
tatcagtgttctgatttggtcaaggacaagcatgttgctttatctataaatcaattagat
gaagaaaaggctataactttggctggaggagatggagatattgacatgcttgctgatgtt
aagcagatggctgctgcagctgctgcagcaggtcaagcaagttcgtcttttgaaaatcag
ctccggccaattgatagatatgccatgcggtttttggaactctgggatccaataattgat
aaagctgctataaactatcaggtcaatgttgaagaggaagaatgggaacttgaacgcatt
gaaaaactcaaagaagatttagaagcagaaattgatgaagaccaggaaccactttcttat
gagtcatgggatgttgattttgctactacagcatatcggcaacatgttgaggctctagct
caaaaacagttgttggaggaacaagaaagacaagcccgtgaagcagcaaaagagttggag
gaaaagaatgataatagcactcaacgaaaaaagtcaaaaaagaacaagaagaaggcagcg
aagttcaaatctttgaagaaaggacgtttatcatctgagtcagaggttatggttgaggaa
acatcagtagatactatgagcattgatgacaatgcaccctcaccagagctaatgagcgat
gaatcagcacaccattattgtaacaagcataagaggataatgtcaaccaatgaggaagag
aacagcaatagcagaagcctgaagaagctcaagaaagcccctaaatcgagtttcagttcc
gaggccttatcacctaagcattttcttgaaggcaagcagcttaagttgaaagatgaactt
aatgattctgatcccaaatcgggggcaagaattaagagtgatggccgaatttctgtccaa
tgcatgccagtaaagcgtgtcatggtaatcaagcctgagagattgaagaagaagagccta
tggtctcgcgattgtgcttcagactcatggacaactgaggaagatgctgttctttgtgca
actgtaaatgagtacggccctctttgggaactggctagtgattctcttcattctgtacca
ggtggtgcattttatagaggaagataccgtcaccctgtgcattgctgtgagagattccgg
gaattagtctgcaagcacatcttatcagcaacagacaattcaaacagtgagaaggttcct
tctgggactgggaaggctatcttgaaagtatctgaggatcaaactcagatgttgctcaat
gtaatcagcgagcttcctaacaatgaattgcttctccagaaacatttcatggctgttctt
tcatctgtttggagatcgaagtctgcccgtgagtcccactgtgttttgagttactctaac
acactccagaaacctggcagactcagcgagaactggtccatgacaaacttcagaccaaac
tttaatctagtaaggacagccctcgcagatgctcaggttcaatgtccaagaatggtagtt
ccaacaagcaatcatgagtcccgccgtaactttttggaattggaattggatttcttgaca
gatcgagatgattatgaggcggactttccatctgttgttaacgtgtccatactagaaccg
gaaccattaaaacatgctgtggagccagtggagcactcactactgtccacactttcttat
agacatgctgagaacagattcaggatggtatcagaaacttgttttgaaggggaaggttct
cactgggcctcatctgctttccacacatacgatgccggtcggcataaatctggtcctaag
tccataggaaagcacaaagcatcatcagaatctggaaggcctcccaaatccaaaattcaa
aggaccactgaaccacaggaagtgccggttacaaataattttcataggattccagggcaa
cttctgcataactcagcagagttccacattacccagtccctatctgaccttggcatcagt
gattctgaattcacctactttgataatcttcctcaagaggctgaaacagagtttgttccg
taccagtatgactctgatgtcctttctggcattgaggagttggatcctcttacagatttc
acagacatcggatga
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integrated database retrieval system
