Oryza glaberrima (African rice): 127764269
Help
Entry
127764269 CDS
T08853
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127764269
09123 Folding, sorting and degradation
03018 RNA degradation
127764269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127764269
03041 Spliceosome [BR:
ogl03041
]
127764269
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127764269
mRNA degradation factors
5'-3' decay
Lsm complex
127764269
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127764269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
127764269
NCBI-ProteinID:
XP_052145429
LinkDB
All DBs
Position
1:complement(7920978..7924593)
Genome browser
AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGAKPGGRGIGRGQDDG
GSKGGGGRGRGGIGGKGGIKGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagctcaag
aacggcgagacgtacaacgggcacttggtgaactgcgacacgtggatgaacatccacctt
cgggaggttatttgcacctcaaaggatggtgataagttttggaggatgccagaatgttac
atccgtgggaacaccatcaagtatctccgggttcctgatgaggtgattgacaaggtccag
gaagagacttcaaagagcagatcagataggaggccaccaggtgtaggccgcggaagagga
agaggtgatataggtgctaagcctggaggcagaggcattgggcgtggccaggatgatggt
ggcagcaaaggcggtggtggccgtggaaggggaggaattggaggtaaaggtggcatcaaa
ggtgggggccgcggacgtgggtga
DBGET
integrated database retrieval system
