KEGG   Oryza glaberrima (African rice): 127764287
Entry
127764287         CDS       T08853                                 
Name
(RefSeq) uncharacterized protein LOC127764287
  KO
K12828  splicing factor 3B subunit 1
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127764287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogl03041]
    127764287
   03036 Chromosome and associated proteins [BR:ogl03036]
    127764287
Spliceosome [BR:ogl03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    127764287
 Complex B
    127764287
 Complex C
   U2 SnRNP specific factors
    127764287
Chromosome and associated proteins [BR:ogl03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    127764287
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Cnd1 HEAT_2 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME IFRD
Other DBs
NCBI-GeneID: 127764287
NCBI-ProteinID: XP_052145104
UniProt: I1NX82
LinkDB
Position
2:2431135..2436358
AA seq 1283 aa
MDAIDAELARAQEERKKMEEALAAGAPMAVSSVTFDTDLYGGGGSDPNRFAGYDTSIPAS
EDDAPEDDSEAAVNPAARRLASYTGHAVAAADIPRAAEDDGLPKKSQRIIDREDDYRRRR
LARIISPERHDPFAAGEATPDPSVRTYADAMRENDLQKQKEQLLRDIAQKKKEEEEKAKE
KKAVPEQQPVAAPKRRNRWDQSQDGDASAAAGSKKAKTSSDWDAPDATPGIGRWDATPGR
VGDATPSVRRNRWDETPTPGRMADADATPAAGGITPGATPSGAWDATPKLPGGLVTPTPK
KQRSRWDETPASMGSATPGGTGAATPAGYTPGPTPFGGDNLATPTPGQIASRGPMTPEQY
QLLRWERDIEERNRPLTDEELDTMFPQEGYKILEPPASYQPIRTPARKLLATPTPLGTPL
YAIPEENRGQQFDVPKELPGGLPLMKPEDYQYFGTLLNEEEEEQLSPEEQKERKIMKLLL
KVKNGTPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYK
LDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDE
YVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPH
LKSLVEIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDTVLKPLWKGIRSHRGKV
LAAFLKAIGFIIPLMDALYASYYTKEVMQILIREFQSPDEEMKKIVLKVVKQCVSTEGVE
ADYIRNDILPEFFRHFWVRRMALDRRNYKQLVETTVEMANKVGVADIVGRIVEDLKDESE
PYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNAL
GQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEY
LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR
IADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNL
KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEM
GKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFE
TSPHVINAVMEAIEGMRVALGPAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALV
AAYPALDDDGDNIYSRPELAMFV
NT seq 3852 nt   +upstreamnt  +downstreamnt
atggacgccatcgacgcggagctcgcgcgggcgcaggaggagcgcaagaagatggaggag
gccctggccgccggcgcgcccatggccgtctcctccgtcaccttcgacaccgatctctac
ggcggcggcggctccgaccccaaccgcttcgccggctacgacacctccatccccgcctcc
gaggacgacgcgcccgaggacgactccgaggcggccgtcaaccccgccgcccgccgcctc
gcctcctacaccggccacgccgtcgccgccgccgacatcccccgcgccgccgaggacgac
ggcctccccaagaagtcgcagcgcatcatcgaccgcgaggatgactatcgccgccgccgg
ctggcccgcatcatctcgccggagcgccacgatcccttcgccgccggtgaggccaccccg
gacccttccgtgcggacctatgctgatgccatgcgcgagaatgacctgcagaagcagaag
gagcagctgctgcgtgatatagctcagaagaagaaggaagaggaggagaaggccaaggag
aagaaggccgtgcccgagcagcagccagtggcagcgccgaagcgccgcaatagatgggat
cagtcgcaggatggtgatgcttctgctgctgctggatccaagaaggcgaagacctcctcc
gattgggatgctcctgatgcaactcctgggattgggcgctgggatgccacccctggtcgt
gtcggggatgcgacgccgtcggtgagaaggaatcgttgggatgagacaccaactcctggg
aggatggccgatgcggatgcaacacctgcagctggtggcattactccaggtgccacacct
tctggagcttgggatgctactcctaagctgcctggtggccttgtcacgccaacacccaag
aagcagagatcgagatgggatgagactcctgcaagtatgggtagtgctacacctggaggc
actggtgctgcgacgcctgcaggttacactcctggtccgacgccatttggtggtgacaac
cttgcgacgccaacacctggccagattgcttctcgtggtccaatgactccagagcagtac
cagctcttgcggtgggagcgggacattgaggagcggaacaggcctcttacggatgaggaa
cttgatactatgttcccgcaggaagggtacaagattcttgaacctccagcttcataccaa
cccatacgcacaccagcaagaaagctgctcgctacaccgacaccattgggcacgccattg
tatgccattcctgaggagaatcgtgggcagcagtttgatgtgcccaaggagttgcctggt
gggctgcccctcatgaagccagaggattaccagtactttggaacattgctgaatgaggag
gaggaggaacagctatctccagaagagcagaaggagaggaagatcatgaagctcctgctc
aaggtgaagaatggcacacccccacagcggaagacagcacttcgacagctaacagacaaa
gcaagggaatttggtgctggcccattgttcaacaagattctacccttgctcatgcagcca
acacttgaggaccaggagcggcatcttctggtgaaggtcattgacagggtactgtataag
ctggatgagctagtccgtccgtttgtccataagattcttgtggtcattgagccacttctg
attgatgaggactactatgctcgtgttgagggccgggagattatctcaaatcttagcaaa
gctgctggtcttgctactatgattgccgccatgagaccagatattgataacattgatgag
tatgtgagaaataccactgctagagcatttagcgtggtggcttctgctttgggtatccct
gctctcctgccattcttaaaggctgtctgtcagagtaagaagtcctggcaagctcggcac
actggtatcaagattgttcagcagattgctattcttatgggctgcgctgttctgccacat
ctcaagtccctagttgagatcattgagcatggtcttagtgatgagaaccagaaagtgcgg
acaatcactgccctttctcttgctgcactcgctgaggctgctgcaccatatggtatagaa
agttttgatactgttttgaagcctctgtggaagggtatcagatctcaccgtggaaaggtt
cttgctgccttcttgaaagcgattggttttatcatccctcttatggatgcgctgtatgcc
agttactacacaaaggaggtcatgcaaatcctgattagggagttccagtcaccagatgaa
gagatgaaaaagattgtcctgaaggttgttaaacagtgtgtcagtacagagggtgtagag
gctgattatatccggaatgacatccttcctgagtttttccgtcacttctgggttaggaga
atggctctggaccgcaggaactataagcagcttgtggaaacaactgtagagatggcaaat
aaggttggagttgctgatattgttgggaggattgttgaggatctgaaagatgaaagcgaa
ccttacaggagaatggtgatggaaacaattgagaaggtagtggctaatttgggtgcttca
gatattgatgctcgtttggaggagctgcttattgatggcatcttgtatgctttccaagag
cagacaagtgacgatgcaaatgtcatgcttaatggttttggggctgttgtcaatgcactg
ggacagagggtcaagccttaccttcctcagatttgtggtaccattaagtggcggttgaac
aacaagagtgcaaaagttaggcagcaagctgctgatctgatctcaaggatagccattgta
atgaaacagtgccaggaggagcagcttatgggtcacttgggtgttgtgctgtatgagtat
ttgggagaggagtaccctgaggtgttgggttcaattcttggagcactgaaagctattgtg
aatgtcattggcatgactaagatgacaccaccgatcaaggatcttcttcctcgactgact
cctattttgaagaacaggcatgaaaaggtccaggagaactgcattgatctagttggtagg
attgctgatcgtggagcagaatttgtgcctgctagggagtggatgaggatttgttttgag
cttcttgaaatgttgaaggctcacaagaagggtattagaagagccactgtgaacacattt
ggttatattgcgaaggctattgggccgcaggatgtgttggctactctgttgaataacttg
aaggttcaggaacggcaaaaccgtgtctgcacaactgtcgcaattgccattgttgctgaa
acctgctcaccttttacggttctgcctgccctgatgaatgagtaccgagtcccagaactc
aatgttcagaatggtgtcctgaagtctctctctttcctctttgagtatattggtgagatg
ggcaaggattacatatatgctgttactcccttgcttgaagatgctctaatggacagagat
cttgttcaccggcaaactgctgcctctgctgtgaagcacatggctcttggtgttgctggc
ttgggctgtgaggatgctcttgtccatttgcttaactatgtctggccaaacatatttgag
acatctccccatgtcatcaatgctgtcatggaggcgattgaggggatgagagttgctctt
ggtccagctgtgatcttgaattactgccttcaaggccttttccatccagcaaggaaagta
cgtgaagtatattggaaaatctacaactcactatatattggtgcacaagatgcgcttgtt
gctgcttatcctgcactggatgacgatggggataatatctacagccgtccagagctggcg
atgtttgtctga

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