KEGG   Oryza glaberrima (African rice): 127764641
Entry
127764641         CDS       T08853                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    127764641
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ogl03021]
    127764641
Enzymes [BR:ogl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     127764641
Transcription machinery [BR:ogl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     127764641
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 127764641
NCBI-ProteinID: XP_052145508
LinkDB
Position
2:complement(2763162..2777591)
AA seq 1962 aa
MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES
CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS
ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT
LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFA
ISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ
VTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNR
PPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFS
VEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSKP
YWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPGEA
LQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVE
MRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRR
LVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLT
EPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYMEDDALDFPSAIGPGEPVGVLAA
TAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKE
KAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLERINIST
EDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCSFTQKLVDGKLPKLPCLQFFVSDNM
IVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEPA
VEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQR
LSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPM
KCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDYLA
LVRTDEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQNNSSWDN
GTTTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPADQGNSCWDVPATVEKSSSDWG
GWGTEKAKEKEKISEEPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKENKGRGSN
GGSWEKDNAQKGSWGRGNDEAENNNDVQNKSWETVAADAHASTEKSWGNVTASPSDNAWS
AAPVSQGNGSSDTKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNASPVSQGNE
RSDAKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNAAPVSQGNERLDAKQSDS
WDGWKSAGVDDSVKDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQSDSWDGWKSAGVD
ASTNKDKESWGNVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKSDGWGARGGNWR
GQRNNPGRPPRKPDGRGLPRRPDERGPPRRHFDLTAEEEKILGEIEPTVLSIRKIFRESI
DSIKLSPEDEKFIKENVLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSD
FSYLKCMENFVRKTYPEHGDSFCKKYFKRRRDQPPAADGGTAPGTPAGATQSTAVDTQEG
TSQQTQPDIATAPAATQQETLQDTPAPPADDGLLGKGPSPSD
NT seq 5889 nt   +upstreamnt  +downstreamnt
atggaggaggaccagtcagcaattccggttgctgaaggtgccatcaagagcatcaagctt
agcctatccactgaggatgagattcgtacttattctataaatgactgtcctgtcactcat
cctagtcagctcggaaatcccttccttgggttacctttggagacaggaaaatgcgagtcc
tgtggtgcctcagaaaatggaaaatgcgaagggcatttcgggtacattgagctgcctgtg
cctatatatcacccttgccatgtaacggaactgaggcagatattaaatgtggtatgtttg
aaatgcctccgcgtcaagaaaggaaaggtcaaacagacagagggaaaggataacacatca
gcattgtcatgctactattgtcgggatcttccggcattatctttgaaagaaatcaaaaca
gcagatggtgcatttcgtttagagttgaaaatgcctcctaggaaattcatgacagaaggc
tcatggaacttccttgacaagtatggatttcaccatggtggaacctcccactgcaggacc
ttgctcccagaagaggctctcaatatattgaagaaaattcctgaagaaacgaagaggaaa
ctagctgctcgtggttacattgctcaatctggatatgtgatgaaatacctccccgtgcca
ccaaattgtttatacattccagaatttacagatgggcagagcatcatgtcctatgacata
tcaatatctctgctgaagaaggtgcttcagaaaatagagcagataaaaaagtcaagagct
ggatccccaaactttgaatcacatgaagttgaatcatgtgatctacagctctctattgcc
cagtacatacatctaaggggcactacaaggggtcctcaagacaacaccaagagatttgca
atcagtactgatccttctgcgttatcaacaaaacaatggctggagaagatgagaacatta
tttatcagcaaagggtcagggttttcatcacgcagtgtacttactggagatccatatatt
ggagtagatgtgattggactgccttctgaagtggcaaaaagaatcactttcgaagagcag
gtaacagacatcaaccttaacaggttgcaagagattgtggataagggattgtgtttgacc
tacagagatggccaggcaacctatgccatcaccgttggatccaaaggtcacactaccctg
aaagtcggacagactatcagtaggagaattgttgatggggatgttgttttccttaaccgt
ccacccagtacccacaagcattccctccaggcatttcgcgtgtatgtccatgaagaccat
acggtcaagatcaatccgctcatatgcgcaccttttgcagcggactttgacggtgattgt
gtgcacatctattatccacagtcccttgctgcaaaagctgaagcactggagcttttcagt
gtggagaagcagcttaccagttcgcacagtggcaaggtcaatctccagctagttagtgac
agtttgcttgctctgaagcatatgtcttccagaacaatgttgagcaaagaagcagctaac
cagctggcaatgcttgttacatgttctcttccagatcctgctgtgatcaagtcaaagccg
tactggacaatctcgcaaatagtgcaaggtgctctgccaaaagccttaacttctcaaggg
gacaaacacgtagtcagggacagcactattataaaactggatcttgacaaagaatctgtt
cagacatcattctcagatttagtgtattccactctttctgttaagggtccaggagaagca
ctacaatttttgaatgtgctgcagccattattgatggaattgattcttttggatggcttt
agtgtaagcctccaggacttcaatgttcccaaggttctattggaagaagcacagaagaac
attgaaaaacagtctcttatccttgaacaatcaagatttgcagaaaatcaggttgttgaa
atgcgtgttgataataatttgaaggacatcaaacagcaaatttcagattttgttgtgaaa
cgctctcatcttggacttctgattgatccaaagagtgactcttcagtgtctaaagttgtc
cagcagcttggttttgtgggtttacaactttaccgtgaggggaagttctactcacgtcgt
ctggtggaggattgctactacacttttgtgaacaagcatccagctgtcagagaagaacat
tctccagaggcatatggtcttgtacggagttcatattttcatggccttaatccgtatgag
gagctggtgcatgctatttcgacaagagaagctattgttcgctcctctagggggttgacg
gagcctggaacactatttaagaatctaatggcgttactgcgggatgtcgtcatatgctat
gatgggacagtaagaaatgtctgcagcaagtctatcatacaacttaactacatggaggat
gatgccttggacttccctagtgcaataggtcctggcgaaccagttggtgtcttggctgcg
actgctatctccaaccctgcatacaaggctgtcttggatgcatctcagagtaacaatact
tcatgggagcggatgaaggaaatacttcagacaacaagtcgctacaaaaacgatatgaaa
gaccgaaaagttatcctatttctgaatgattgctcttgtgccaagaagttttgcaaggaa
aaggctgctattgcagttcagggctgcctaaggagaattacgttagaagattgtgctact
gacatctgcattgagtaccagaagcaaataggtttagatggaacttcagaagcagcccca
gcacttgttggccatattcatcttgacagggcacatttagaaaggatcaacattagcact
gaagatattcttcagaaatgccaagaagtttctgggaaatatgggaagaagaaaggacat
ctcagtaacctgtttaaaaatattacattctctacttgcgattgttcattcacacagaag
ctggttgatggaaagctacctaagcttccgtgtttgcaattctttgtttctgataacatg
atagtatctgaatcagtggagagagcagtcagtgtgttagctgattctctatgtggagtg
cttttgaatacaatcataaaaggtgatcctcgaattcaagaggctaaaattgtttgggtt
ggatcggatgcaacatcttgggttaaaaacacacagaaggcatcaaagggtgagccagca
gtagaaattattgttgaagaagaggaagctttacatattggtgatgcctggagaacaaca
atggatgcctgcataccggttctgaacctcattgatatacggagatcaatcccttatggt
attcaacaagtgcgagaacttcttggcatctcatgtgcttttgatcaagttgtgcagcgg
ctttcaacaactgtaaggatggtcgctaaagatgttctcaaagatcatctggtacttgtg
gcaaatagcatgacatttactggaaacctgaatggatttaacaatgctggttacaaggcc
accttccgttccttaaaagttcaagtacctttcacagagtccacattgattacccctatg
aaatgctttgagaaggctgcagagaaatgtcattcggattcattgggatgtgttgtttca
tcatgttcttggggcaagcatgctgcaagtggtactggatcatcttttcagattctgtgg
aatgaaagtcagctgaaaagcaataaggagtatggtgatggcctgtatgattacttggca
ttggtgcgtactgatgaggaaaaggcaagatacacattctttgatgatgtggactacctt
gcagaagagaacgaggcagatgtgtgcttatctcctgaattggatgggaccattggtcaa
ccgatcttcgatgataatttggaagagcaagatgttcagaataacagctcgtgggataat
ggcacaacaacaaatgcaagctgggaacagaatggtagtgctggaaatgattctgataaa
tggggaggttggaatgatgcagctgcaggagctgacacgggagtcacaaaaccagcagac
caagggaattcgtgttgggatgtgcctgcgacagtggaaaagagttcctctgattgggga
ggctggggcactgaaaaggcgaaggagaaggagaaaatatctgaagagccagctcaacat
gatgcttggtctgtccagggccctaaaagggcaacagatggaggagccagctggaagaag
cagtctagcactcagaatgatgggaactcctggaaagagaacaagggaagaggatcaaat
ggaggttcctgggagaaagataatgcgcaaaagggatcatggggcaggggcaatgatgaa
gctgaaaataataatgatgtgcaaaacaaatcttgggagactgtggctgcagatgctcat
gcttctacagagaagtcctggggcaatgttactgcatctccatcggataatgcatggagt
gctgctccggtttcccaagggaatggaagttcagatacaaagcaatctgattcttgggat
ggctggaagtctgctggagttgacaaagcaattaacaaagacaaggaatccttgggcaat
gtgcctgcatctccatcatttagtgcgtggaatgcttctccagtttcccaagggaatgaa
cgttcagatgcaaagcaatctgattcttgggatggctggaagtctgctggagttgacaaa
gcaattaacaaagacaaggaatccttgggcaatgtgcctgcatctccatcatttagtgcg
tggaatgctgctccagtttcccaagggaatgaacgtttagatgcaaagcaatctgattct
tgggatggctggaagtctgctggagttgatgattcagttaaagacaaggaatcctggggt
aatgtgcctgcatccccatcagatagtgcgtggaatgctgctccagtttcccaagggaat
gaaagttcagatgcaaagcaatctgattcttgggatggttggaagtctgctggagttgat
gcttcaactaacaaagacaaggaatcctggggcaatgtgcctgcatctccatcagatagt
gcatggaatgctgctccagtttcccaaggggatgatgtctggaattctgctgaagccaat
gagtcacgtaataaggactggaaatcagatggatggggtgccagaggtggcaattggagg
ggccaaagaaacaatcctggtaggcccccaaggaaacctgatggcaggggtctgcctagg
agacctgatgagagggggccaccaaggcgacactttgacctaacagctgaggaggaaaag
attctaggagaaattgaacccactgtgctgagcatcagaaagattttccgtgaatcaatt
gatagcataaaactttctccggaagacgaaaaattcatcaaagagaatgttcttgaacac
caccctgagaaacaatcaaaggtgtctggtgaaatcgatcacataatggttgacaagcac
caagtgttccaggatagtcggtgcttgtttgtggtgtcttcagatggaactcggtcagat
ttctcctatttaaaatgcatggagaattttgtgaggaagacctaccctgagcatggggac
tcattctgcaagaagtatttcaagaggcgccgtgaccaaccaccagcagctgatggaggc
acagcaccaggcactccagctggggctacacagtctactgcagttgatacccaggagggc
acttcacagcagacccaaccagatatcgcaaccgctccagctgcaactcaacaagagact
cttcaagacactccagctcctccagcagacgatggattgctcgggaagggacctagcccg
tctgactga

DBGET integrated database retrieval system