Oryza glaberrima (African rice): 127765366
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Entry
127765366 CDS
T08853
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127765366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127765366
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127765366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
YceD
Motif
Other DBs
NCBI-GeneID:
127765366
NCBI-ProteinID:
XP_052146209
LinkDB
All DBs
Position
3:34676743..34681023
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AA seq
266 aa
AA seq
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MSAAATAGTYSPASAAGEKRRERKEELRRHLAEDADWPRADGRSFHDCRPAFMQTGPTTA
ASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFATPIRGQFASLFQGT
DNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMY
DLVTSVSVSCFGKNIIIDPTSDEEAWQDGSLMVAYMPARKEITQLTLTGEWSDGKITNAV
ELCMDACSKLCDILRERLKDASSLAE
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggctgccaccgctgggacctactctccggcttctgccgcaggggaaaagcgt
cgggagaggaaggaggagctgcggcgccacctcgccgaggacgccgactggccccgcgcc
gacggccgctccttccacgactgccgtcctgcatttatgcaaacaggaccaacaaccgct
gcatcaggatctgcttatgcggaatttgggaagacaaaggtcattgtgtcagtgtttgga
ccgagagaaagcaagaaagcaatgttgtacagtgatactggtagactcaattgcaatgtg
agctacacaacatttgccacccctatacgtgggcagtttgcatctttgttccagggaaca
gataacaaggagtactccgcaatgcttcataaagctctggaaggcgcagtgatgttgcac
acttttccaaagaccactgtagatgtttttgccttggttcttgagtctggtggcagtgat
cttcccatcattatttcttgtgctagtcttgcgttggctgatgctggaatcatgatgtat
gaccttgttacatcagtatctgtgtcctgttttgggaagaacataatcattgatccaacc
tctgacgaggaagcatggcaagacggcagccttatggtggcgtacatgccagcccgcaag
gagatcacgcagctaactcttactggagagtggtctgatggcaaaatcacgaacgcggtg
gagctctgcatggatgcctgcagtaagctctgtgacatacttcgggagcgcttgaaagat
gcttccagcttggctgagtga
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