Oryza glaberrima (African rice): 127765795
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Entry
127765795 CDS
T08853
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127765795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127765795
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127765795
mRNA degradation factors
5'-3' decay
Decapping complex
127765795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
WH1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
127765795
NCBI-ProteinID:
XP_052146714
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All DBs
Position
3:complement(34364249..34369669)
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AA seq
475 aa
AA seq
DB search
MARGGSGGGRWRRLNVRPDLASDQEGTRTLNLTVLRRLDPAVADILIIAAHVVLYSFDDN
IHQWSRRPVEGSLFVVKRNTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAA
DEITGIWFYDPQECEQVGYLFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTL
KQPTSSIMVLDNAKYDFLSALLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPP
QSPAIQSNKSFGMVHSSTQAPLAIPPQSPAIRSNKSVGMIHSSTHASPFDIPPQSPAVQS
NKSVGMIHSLTHASHLAIPPQSPALHGLHPSQISSVPVMPHDAHRSSSTSTIQPTSLANP
LFFPPMPSLQTASHAASSLCSAAPLHPPITVQQLQSAPLHQPFSLPTASSIPPPYGMPLL
QPFPPPNPSPFLTSGVSYGRPVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcggcgggagcggaggcgggaggtggaggagactgaatgtgaggcccgacctg
gcgagcgaccaggagggcacgcggacgctcaacctcacggtgctgcgtcgcctcgacccc
gccgtcgccgacatcctcatcatcgccgcgcatgtcgtcctctacagcttcgacgacaac
atccaccaatggagccggaggcctgtggaggggtcgctcttcgtcgtcaagaggaacacc
caacccagattccagtttattgtcatgaatcgtaaaaatacagaaaatctgaccgaagat
ctcttggggggttttgaatatcaagtacaagtcccttacatcatgtaccacaatgctgca
gacgaaatcacaggaatttggttctatgatcctcaggaatgtgaacaagttggatatctt
ttcagtaggatacagaaggcattttccagggtgtccccaaaggccaaggtttctgtaact
gaaagtgagtatgaaaagccggaagtagtgcctgctgttccttcgaatgaggatactcta
aaacagccaacgtcatctatcatggtgctggataatgcgaagtatgatttcttgtcggct
ttgctaaagggtgctgcatgtgttggtgctaccatggacgaagcaagtgcagtacagtca
aacaaatctgttgggatggttcattcatctactcatgcgtcacctcatgctattccacca
caatctcctgcaatacagtcaaataaatctttcgggatggttcattcatctactcaggca
cctcttgctattccaccacaatctcctgcaatacggtcaaacaaatctgttgggatgatt
cattcatctactcatgcatcaccttttgatatcccaccacaatctcctgcagtacagtca
aataaatctgttgggatgattcattcacttactcatgcatcgcatcttgctattccacca
caatctcctgctttgcatggtctgcatccttctcaaatttcatcagttcctgtgatgccc
catgatgctcatagatctagtagcacttctaccatccagcctacaagtctagcaaatccg
ttgttctttcctccgatgccatctttgcagacagcttctcatgctgcttcgtcattgtgt
tctgctgctcctcttcatcctcccattaccgttcagcagcttcaaagtgctcccttgcac
cagcccttctccctaccgactgcatcgtccattccaccaccatatggcatgccattactg
cagccatttccaccgcccaacccttccccatttcttacctcgggagtgtcttatggccgc
ccagtgatcacaagagaccaactgaaggatgtgctactgagtctttgtcagaatgatgaa
ttcatcgatatgatatatcgggagttcgtgaagagacagttaccttga
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