KEGG   Oryza glaberrima (African rice): 127765863
Entry
127765863         CDS       T08853                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ogl  Oryza glaberrima (African rice)
Pathway
ogl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127765863
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogl03041]
    127765863
Spliceosome [BR:ogl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    127765863
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML NBCH_WD40 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_TEP1_C PRP4 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR41 WD40_RFWD3 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_WDR75_2nd Beta-prop_NWD2_C WD40_like Tricorn_2nd LCE Beta-prop_NUP159_NUP214 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 127765863
NCBI-ProteinID: XP_052146786
UniProt: I1PBD3
LinkDB
Position
3:12871142..12875450
AA seq 520 aa
MENPRPQAPAGTPPMAPLPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGEADYE
VSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGEREMERRD
RLRALMVRLEADGHLDRLLRAQEEEQGAAGAEEEEEQIQYPFFTEGTQELLKARVDIAQY
SLPRAKARIERAKRRHDDPDEDPEAEANLVVKQAEDFVLECSEIGDDRPLTGCSFSRDAS
MLATSSWSGMIKVWSMPQVTKIATLKGHTERATDVAFSPVDDCLATASADKTAKLWKIDG
SLLMSFDGHLDRLARLAFHPSGGYLATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSF
HPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGFLVATGSEDNFCRI
WDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLVGHES
KVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNAMELD
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccacaggcccctgcggggacccctcccatggctcccctccccgtg
cccccgcccatcgcccccatccctgccccgcctccgcgagcccccgcgcccgccccggcc
gccgccgctgccgtcgcctccacctccgcggcgggaggcggcggtgaggctgactacgag
gtctccgatgaccaccgcgccgcgcgggagcgccacgagcgcgcggtgcaggagctgctc
cagcgccgccgcgccttcgccatggccgtgcccaccaacgactccgccgtgcgggcgcgc
ctccgccgcctcggcgagcccgtcacgctcttcggcgagcgcgagatggagcgccgggac
cgcctccgcgccctcatggtccgcctcgaggccgacggccacctcgaccgcctcctccgc
gcgcaggaggaggagcagggcgccgctggcgccgaggaggaggaggagcagatccagtac
cccttcttcaccgagggcacgcaggagcttctcaaggcgcgcgtcgacatcgcgcagtac
tcgctgccacgagccaaggccaggatcgagcgggccaagcgccgccatgacgaccccgac
gaggaccctgaggcagaggccaaccttgtcgtgaagcaggcggaggatttcgtgcttgag
tgcagcgagattggagatgaccgccccctcaccggctgctccttctctcgagatgcatca
atgctcgctacaagttcatggagtgggatgatcaaagtgtggagtatgccacaagtaact
aaaattgcaactctgaaaggtcacacagaacgtgcaactgatgttgcgttttcaccagtt
gacgactgcttagcaacagcttcagctgataaaactgccaaactatggaagatcgatggg
tcactcttaatgtcctttgatggtcacctggatcggcttgctcgccttgcttttcatcca
tctggagggtaccttgctacagctagctttgacaagacctggagattgtgggacgttagc
actggaaaggaacttctactccaagaagggcacagcagaagtgtctatggagttagcttt
cacccagatggttctttagctgcatcttgtggtcttgatgcatatgctcgagtttgggat
ttaagatcaggaagattgtggggcacacttatgggacatgtgaagcctgtcttaggagtg
agcttctcccctaatggttttctggttgcaactggaagtgaagacaatttctgtcgaata
tgggatttgaggactaaaagaatgttatattctataccagcacataagagtcttatctca
catgtcaagtttgaaccccaggagggctattatttggcaacttcatcctatgacaccaaa
gcagcgctgtggtcagctcgtgattacaaaccaatcaagagtttggtgggccatgagtca
aaggttactagtttggatattagtggagatgggcagcagattgtgactgtgtcacatgat
agaacgatcaagatttggtcctgcagaagcagggcacaagataatgccatggagctggac
tga

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