Oryza glaberrima (African rice): 127765952
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Entry
127765952 CDS
T08853
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127765952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127765952
03009 Ribosome biogenesis [BR:
ogl03009
]
127765952
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127765952
Spliceosome [BR:
ogl03041
]
Complex A
U2 snRNP components
U2 related factors
127765952
Complex B
127765952
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127765952
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
90S particles
Helicases
127765952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
SRP54
nSTAND3
T2SSE
AAA_30
AAA_7
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
127765952
NCBI-ProteinID:
XP_052146887
LinkDB
All DBs
Position
3:10709579..10713331
Genome browser
AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAATTNGSAAAAAANPSINRWTGRPYSARYLEILE
KRRTLPVWQQKDDFLAVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTPLGETMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTTRNFIRTVTDIRGDWLIDVAPHYYDLGNFPSCEAKRVLERLYNKRERERAAN
RN
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctcggccgcgccgccaccaccaacggctcggccgccgccgccgcggccaac
ccgtccatcaatcggtggacggggaggccctactcggcgaggtacctcgagatcctcgag
aagcgccgcacgctacccgtgtggcagcagaaggacgatttcctcgccgtcctccgcgac
aaccagaccctcatcctcgtcggagaaaccggaagcggcaagaccactcagattccccaa
ttcgtgctcgaggctgaaggcttgagcaaccgctcaatggttgcttgcacccagccgcgg
agggtggcagctatgtcagtttcccggcgtgttgcggaggagatggatgttactattggg
gaggaagttggttacagcatccgttttgaggattgcagcagtcacaaaacagttctcaaa
tatttgacagatggtatgcttctgagagaagctatggcagacccacttttagagaggtac
aaggtgattgttcttgatgaggcccatgagcggacattagcaacagatgttctgtttggg
cttctgaaggaggttctaaagaacagacctgatttgaagcttgttgttatgagtgctacc
cttgaggctgagaaatttcagacctatttcagtggtgcaccgttgatgaaggtgcctggg
agacttcatccggttgagatcttctatacacaagaaccagaaagggactacctggaagct
gctatcaggacagttgttcagatacatatgtgtgaacctgctggagatatccttgttttc
cttactggagaggaggagattgaggatgcctgtcggaagataaataaggaaattaataac
atgggggatcaggttggcccagttaaagttgtgcctttgtattctacgctgcctccagca
atgcagcagaagatttttgaacctgctccagccccatcaagagagggaggcccagctgga
aggaaaattgttgtgtccacaaatattgctgagacatccctaaccatagatggtatagtg
tatgtgatagacccagggttttccaaacagaaggtttacaatccaaggataagggtggag
tcccttctggtgtcgccaatttcaaaggcaagtgcacatcagagagctggtcgtgctgga
agaacgcaacctgggaagtgtttcaggttatatacagagaagagttttaacgatgattta
cagccacagacatacccagaaattcttaggtcaaatctggcgaatacggttcttaccttg
aagaagcttggaattgatgatttagtgcattttgactttatggatcctcctgcaccagaa
actttgatgagggccttggaagttttgaactacttaggggcacttgatgatgatggaaac
ctcacgcctttaggtgaaacaatgagtgaatttcctctagatccccagatgtcaaagatg
cttgtcatcagtccaaagtacaactgttcaaatgagatcctttcaatatctgccatgctg
tcagtacccaattgctttctccggcctagggaggcacagaaggctgctgatgaagcgaag
gctcgatttggccacattgacggggaccacctgacacttctgaatgtataccatgcatac
aagcagaacaatgaagatccccagtggtgttatgagaacttcatcaatgccagagctcta
aagtcagctgataatgtcagacaacagcttgttcgcatcatgaccagatttaacctcaag
atgtgcagcacagacttcaatagtcgggagtactacgtcaatatcaggaaagccatgctt
gcagggtacttcatgcaggttgctcacctggagcgaacaggacattacctgaccgtcaaa
gataaccaggttgtccatcttcacccctcgaactgtctagaccataagccggagtgggtc
atctacaatgagtatgttttgaccaccagaaatttcatccgcacggtcacggatatccgt
ggtgattggctgattgatgtggctccacactattatgatcttggtaatttcccctcgtgc
gaggcaaagcgcgtccttgagaggctgtacaacaagcgggagagggaaagagctgctaat
aggaactga
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