Oryza glaberrima (African rice): 127766114
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Entry
127766114 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127766114
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127766114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ogl03009
]
127766114
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
127766114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Utp12
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_ACSF4
ANAPC4_WD40
Beta-prop_WDR3_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
PQQ_2
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
Beta-prop_EML
EIF3I
WD40_Gbeta
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_IP5PC_F
Beta-prop_Aladin
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
127766114
NCBI-ProteinID:
XP_052147127
LinkDB
All DBs
Position
3:10026033..10031512
Genome browser
AA seq
637 aa
AA seq
DB search
MAPAAATIRDLLTSFSPAADFLALSSGDGRIKVWDAVRGHLQTEFADIPPVEVGGGAPAP
GAKRGHLALDYTCMKWVQLSSKKKRKAGSSLLVLGTGSGDVLALDVAAGQWKWRVTDCHP
GGVTAVAYSKHGRSLYTGGTDGMVCRINASDGSVVEKFKSSSKAISALAVSPDGEILATA
AGQLRTFDASDNKKIQKFSGHPVAVRSMVFSGDNQYVLSSGVGERYVAIWKLGSGKTQSS
SCILSMEHPAIFVDCKCSDINDTEGEIHVLAISEIGVCYFWSGTNMDDLRNKKPTKIALS
DSSLSRSKQGFAIFAAKLQGIDGPNSAHVLLAYGSVVKPSFDKLLVRYGMDISLGVSDDG
VLLPMIQPTKPQKGQSAKKQGIITALDHANAEDSILPLPQLHTQEKKRKHNATESSGDIQ
SAPHSDLSSTKLIEKRAPVQRIEDDSVCIEDMMRKCGVIDSRVDQGMEGHPSIPTSILSD
LFGSSSKIDANLPNKKIRAHLRSLKPGDACELLEKLVSSWKTRSGSAEVVLRWIYCLLII
HGRFIPFEKSKKIISDLEKMCGERYKAAEDLLKLSGRLRLLMAQIVKDPNDVSELPSEEM
QDSAAAQSDEEEEDDEIDETVYGEDADSSQTSDDDAE
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgcggccgccaccatccgcgacctgctcacctccttcagccccgccgcggac
ttcctcgccctctcctctggcgacggccgcatcaaggtatgggacgccgtgcgcggccac
cttcagaccgagttcgctgatatcccgccggtggaggtgggcggcggcgcgcccgccccc
ggggcgaagcgcggtcacctcgcactggactacacctgcatgaagtgggtacagctatcg
agcaagaagaagcggaaggcagggagttcgctgctggtgcttggcactggcagtggagat
gtccttgcacttgatgtcgccgcagggcagtggaagtggagggtcactgattgccaccct
gggggtgtcacagctgtagcctactcgaagcatgggcgaagtttgtacaccggaggcact
gatggcatggtctgtaggatcaatgcctcagatggctctgttgtagagaaatttaaatct
tcatcaaaagcaatttctgcgttagctgtgtcaccagatggggagattttagcaacagct
gctggccagttgaggacctttgatgcttctgataacaagaagattcaaaaattctctggc
catccagtagctgtgaggagcatggtttttagtggtgataaccaatatgttctgtcatct
ggagttggggaacgctatgttgccatttggaagttgggtagtggtaaaactcagagttca
agctgtatactctctatggagcatccagcgatctttgtggactgtaaatgttcagacatt
aatgatacagaaggagaaatacatgtgttggctatttctgagattggtgtctgctacttt
tggtctgggactaatatggatgacctgcgtaataagaagcccactaaaattgcattgtct
gattcctctctttcaagatctaagcaaggttttgcaatatttgccgcaaaactgcaagga
atagatggccctaattctgcacatgttctgctggcttatggatctgtggtgaaaccgtct
tttgacaaactgttggttcgttatggcatggatattagtttgggtgtatctgatgatgga
gttctcttacccatgattcaacccacaaagcctcagaaaggccaatctgctaaaaagcaa
ggaattataacggctctagaccatgctaatgcagaagattcaatccttcctctcccacag
ctccatacgcaggaaaagaaaaggaaacataatgcaacagaatccagtggtgacatccag
tctgcacctcatagtgaccttagttctacaaaattgattgagaaaagagctcctgtgcaa
agaattgaagatgacagtgtatgcatcgaagacatgatgcggaagtgtggagttattgat
tctagagttgatcagggcatggaaggtcatcctagcatacccactagtattttatctgat
ctatttggcagcagcagtaaaatcgatgctaatttacccaacaagaagattcgagcacat
ctaagatccttgaagcctggagatgcttgcgaacttttagaaaaattagtatcttcatgg
aaaacaagatctggtagtgcagaggttgttttgcggtggatatactgcttattaattatc
catggtcgttttatcccctttgagaaatctaaaaaaataattagcgaccttgagaagatg
tgtggggaaagatacaaagcagctgaagatttactgaagctttctggtcgtcttcgattg
ctcatggctcagatcgtcaaggatccaaatgatgtttctgagcttccatcagaggagatg
caggattcagcggctgctcagtctgatgaagaggaggaagatgatgaaattgatgaaacg
gtgtatggtgaagacgctgattcgtctcaaacaagtgatgacgacgctgaatag
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