Oryza glaberrima (African rice): 127766807
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Entry
127766807 CDS
T08853
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127766807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127766807
03041 Spliceosome [BR:
ogl03041
]
127766807
03032 DNA replication proteins [BR:
ogl03032
]
127766807
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
127766807
Spliceosome [BR:
ogl03041
]
Complex A
U1 snRNP components
Sm proteins
127766807
U2 snRNP components
127766807
Complex B
U1 snRNP components
127766807
U4/U6.U5 tri-snRNP components
127766807
Complex C
U2 snRNP components
127766807
DNA replication proteins [BR:
ogl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
127766807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF6897
Motif
Other DBs
NCBI-GeneID:
127766807
NCBI-ProteinID:
XP_052147915
UniProt:
I1P9C0
LinkDB
All DBs
Position
3:7048046..7051271
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AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQL
EHVFIRGSRVRFMIIPDMLKNAPMFKRLEARIRGKGSAIGVGRGRAVAMRARAAAGRGGG
PVGRGGAPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagcctggggatcccggtgaagttgctgcacgaggcggcggggcacgtggtg
acggtggagctcaagaccggcgaggtgtaccgcggcgccatggtggagtgcgaggacaac
tggaactgccagctcgacaacatcaccttcaccgccaaggatggcaaggtgtcgcagctg
gagcacgtcttcatcagaggaagcagagtgagatttatgattataccggatatgctcaag
aacgcacccatgttcaagcgcctggaagcaaggatcaggggcaaaggatcagctattgga
gtcgggcgtggccgtgcggttgcaatgcgtgcccgggctgctgctggtcgtggtggtggt
cctgttggacggggtggtgcacctccggtgaggagatag
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