Oryza glaberrima (African rice): 127766834
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Entry
127766834 CDS
T08853
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04120
Ubiquitin mediated proteolysis
ogl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127766834
04120 Ubiquitin mediated proteolysis
127766834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogl04121
]
127766834
Enzymes [BR:
ogl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127766834
Ubiquitin system [BR:
ogl04121
]
Ubiquitin ligases (E3)
U-box type E3
127766834
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
HHA
Motif
Other DBs
NCBI-GeneID:
127766834
NCBI-ProteinID:
XP_052147953
UniProt:
I1PCG5
LinkDB
All DBs
Position
3:17242136..17249238
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AA seq
1036 aa
AA seq
DB search
MASPSPAARPQRTPDEVEDIITRKILLVSLTPPSTPNPAVAYLELTAAELLSESRPLLAL
RDASERLLIDRLSLPDQPAGSPSPFAYLVSSFRRAADEARKISTIRDAALRARLAASIAH
LRGLILSYARIVAGNPDTFPSPHNAPHPAAELLVFLLAEAADPLDPTPAPGAPPPPGFLD
EFFANADYETVEPAMGELYDRLRQSVEKVSALGDFQKPLRVLRRLVGIPNCAKALVNHPR
WIPKNQIMLIGEGRIMEISSVLGAFFHVSAIPDREFASKPDIGQHCFSEASSRRPADLMS
SFTTIKSVMNNLYDGLKDVLLALLKNMDTREKVLEFIAEVINKNAGRSRMQVDPLKSASS
GMFVNLSAVMLRLCEPFLDRMESKKDKIDVNYLFCNDRIDFKNLTAINASSEEVSSWIEN
RGYEHAEDSASGEARFVESQEATSSGNNSTVSLSSKGGSLVNCSKKENFSFICECFFMTA
RVLNLGLMKALSDFKHIAQDLARCQDDLDSNRAMRDQGGGSAQLDQDIKRLEKIVEILSQ
DKLCYEAQIIRDGAFLQRALSFYRLMILWSVDLVGGFKMPLPSQCPKEFACIPEHFLDDA
MDLLVLTSRIPKALESFALDDFLNFIIMFMAGTSYIKNPYLRAKMVEVLNCWMPQRSGLS
STASLFEGHQLCLDYLVKNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHR
NAWRRIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEIEAEMVNVVEWESRPPQE
REERLRVFHQWENIVRFDMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQL
AGPQRKSLTVKDPEKYEFKPKQLLKQIATIYVHITRGDKEGIFPAAISKDGRSYNEQLFA
SAANILWKIGGDPQIIQEFMQLASKSKTAASEAMDAEAMLGDIPDEFLDPIQYTLMKDPV
ILPSSRVTIDRPVIVRHLLSDSTDPFNRSHLTQDMLIPDTELKSRIEEFIRSQRSKKRTA
ADSEMGEPDGAADMAD
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccccgtccccggcggcgcggccgcagcggacgcccgacgaggtggaggacatc
atcacgcgcaagatcctcctcgtctccctcaccccgccctccacgcccaacccggccgtc
gcctacctcgagctcaccgccgccgagctcctctccgagtcgcgcccgctcctcgccctc
cgcgacgcctccgagcgcctcctcatcgaccgcctctccctcccggaccagcccgccggg
tccccctcccccttcgcctacctcgtctcctccttccgccgcgccgccgacgaggcccgc
aagatctccaccatccgcgacgccgccctccgcgcgcgcctcgccgcctccatcgcgcac
ctccgcggcctcatcctctcctacgcccgcatcgtcgccgggaaccccgacaccttccct
tcgccgcacaacgcgccccaccccgccgccgagctgctcgtcttcctcctggccgaggcc
gccgacccgctcgaccctaccccggcccctggtgccccgccgccgccggggttcctcgac
gaattcttcgccaacgccgattacgagaccgtcgagccggccatgggcgagctctacgac
cgcctcaggcaaagcgtcgagaaggtgtcggcgcttggcgacttccagaagccgctgcgg
gtgctcaggcggctggtgggaatccctaactgcgcaaaggctctggtgaatcaccccagg
tggataccgaagaatcaaattatgctcattggggaagggagaatcatggagatctccagt
gtgctcggggcgttcttccatgtcagtgcgatccctgaccgcgagtttgcaagcaagcct
gatattgggcaacattgcttctcagaggcatcttcacgcagaccagctgatttgatgtca
tcttttacaacaatcaaaagcgttatgaataacttgtacgatggccttaaggatgttctt
ctcgccctgctaaaaaatatggatactcgagaaaaggttctcgagtttattgctgaagtg
ataaataaaaatgcaggcagatctcgtatgcaggtagaccctttaaagagtgccagctca
ggtatgtttgtgaatctcagtgccgtgatgctacgtctatgtgagccttttctggatagg
atggagtctaagaaggacaagattgatgtcaattacctcttctgcaatgatagaattgat
ttcaagaatttgactgcaataaatgcttcttccgaggaagtatcatcttggatagagaac
aggggctatgagcatgctgaagatagtgccagtggagaggctcgctttgttgaatcacaa
gaagcgacaagctctggcaacaatagcacagtttctctttcttctaaaggcgggtcactt
gtgaattgctcaaagaaagagaatttctcatttatttgtgaatgcttcttcatgactgca
agggtgctcaatctggggctgatgaaagctctatcggatttcaaacatattgctcaggat
ctcgcaaggtgccaagatgacttggattcaaacagagcaatgagagatcaaggaggtggt
tcagcacagcttgatcaagatataaaacgcttagagaagatagttgagattttatcacag
gacaaactctgttatgaagctcagataattagggatggtgcatttcttcaacgtgcacta
tctttctacagattaatgatactatggtcagtagaccttgttggcggatttaagatgcct
ttgccatcacaatgtccaaaggaatttgcttgcattccagagcatttcctcgatgatgca
atggatttactagttctaacctctagaattccaaaagctttggaaagctttgcgttggat
gactttctcaacttcatcattatgttcatggcgggcacttcatacattaaaaatccttac
cttagagcaaagatggttgaagttttgaattgctggatgccacaaagaagtgggttgagt
tctacagcctcattatttgaggggcaccaactatgtctcgattacctggtcaaaaatctt
ctaaagctttatgtggatattgaattcactggttcccatacacaattctttgacaagttt
aacattcgacataatattgctgagcttctagagtatctatgggatgtccccagtcatcgg
aatgcatggagacgaatagctaaagaggaggagaagggcgtatatttaaattttttgaac
ttccttatcaatgatagcatctatcttcttgatgagagtttgaacaaaatcctcgaactg
aaagaaatagaggctgaaatggttaatgttgtagagtgggaaagcaggccacctcaagaa
agagaggagagattgcgtgtatttcatcagtgggagaatattgttcgatttgacatgaag
ctagcaaatgaggatgttgggatgcttgctttcacgtcagagcagattccagcacctttc
ctccttcctgaaatggtagaaagggtggcaagcatgctaaattacttcctcttgcaactt
gctggtcctcagaggaaatcattgactgtaaaagatcctgaaaagtatgagttcaagccg
aagcagctcttgaaacagattgccaccatctatgtccatatcacaaggggtgataaagaa
ggtatattcccagcagccatctcaaaagatggaagatcatacaatgagcagttgtttgca
agtgcagcaaatattttgtggaagattgggggagacccccaaatcatacaggagtttatg
caacttgccagtaagtcaaaaactgctgcttctgaggcaatggatgctgaggctatgctt
ggtgacataccagatgaatttcttgatccaattcagtatactctgatgaaggatcctgta
atactaccatcatcacgggtgacaatagatcgtcccgttattgttaggcacttgctaagt
gacagtactgatccgttcaaccgttctcaccttacgcaagacatgttgataccggataca
gagctcaagtcgcgcatcgaagagtttatcaggtctcaacggtccaaaaaacgaactgct
gccgattcagaaatgggagaacctgatggggctgctgatatggctgattga
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