Oryza glaberrima (African rice): 127767006
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Entry
127767006 CDS
T08853
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
ogl03015
mRNA surveillance pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127767006
09122 Translation
03013 Nucleocytoplasmic transport
127767006
03015 mRNA surveillance pathway
127767006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127767006
03041 Spliceosome [BR:
ogl03041
]
127767006
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127767006
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127767006
Spliceosome [BR:
ogl03041
]
Complex C
Other components
EJC/TREX
127767006
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127767006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
127767006
NCBI-ProteinID:
XP_052148202
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All DBs
Position
1:18706869..18713043
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AA seq
432 aa
AA seq
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MAEAEVKDNEVYEEDLVDYEEEVENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKP
ELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQV
GALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPG
RILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKE
IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFV
KSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIE
RVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKEL
PEQIDTSTYMPS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagccgaggttaaggacaacgaggtttacgaggaggatctcgtcgactacgag
gaggaggtggagaacggcaccgacggtggcgccaacgccgccaacgcctccgccgatgtc
gtcaagaaggggtacgtggggatccacagctcggggttcagagacttcctgctcaagccg
gagctgcttcgcgccatccaggactgcgggtttgagcacccttccgaagtgcaacacgaa
tgcatcccacaagccattcttggaatggatgtcatctgccaagcaaaatctgggatgggg
aagactgctgtttttgttctctcaagtcttcagcaaattgatcctgttgctggtcaagtt
ggtgcacttgtgctatgtcacacaagggagctagcttaccagatttgccatgaatttgag
aggtttagcaagtaccttcctgaggtaaaagttgcggtcttctatggtggcgttcacata
aaaaaacacaaggatctgttgaagaatgactgccctcatattgtggttggaacacctgga
aggatactagctctagctagagagaaggatctttccttgaagaatgtgaggcatttcatt
cttgatgaatgtgacaagatgctcgattcacttgacatgcgtagagatgtgcaggagatc
ttcaaaatgacaccccatgataagcaagtgatgatgttttcagcgacccttagcaaggag
atccgcccagtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgag
gctaaactgacccttcatgggctagttcagcactatattaaactaagtgaggcggagaag
aaccggaaattgaatgatctcttagatgcactggacttcaatcaagttgtgatatttgtt
aaaagtgttagtagagctgcagaactgaacaagctgctttgtgaatgcaactttcctgcg
atctccatacattctggaatgacacaggaggagaggcttacccggtacaagaacttcaag
gaaggacacaagaggattcttgttgctactgatttagttggcaggggaattgatattgaa
cgtgtcaacattgtcataaactatgacatgcccgattctgctgattcgtatctacacagg
gttggaagggctgggcgttttggaaccaaaggacttgcaataacatttgtttcctctgcc
tctgactctgatgttcttaatcaagtgcaagaaagattcgaggttgacataaaggagctt
cctgagcagattgatacttcgacatatatgccttcttaa
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