Oryza glaberrima (African rice): 127767215
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Entry
127767215 CDS
T08853
Name
(RefSeq) BRCT domain-containing protein At4g02110-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127767215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogl03032
]
127767215
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127767215
DNA replication proteins [BR:
ogl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
127767215
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
127767215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
Motif
Other DBs
NCBI-GeneID:
127767215
NCBI-ProteinID:
XP_052148440
UniProt:
I1PAJ6
LinkDB
All DBs
Position
3:10193871..10201321
Genome browser
AA seq
1462 aa
AA seq
DB search
MASPISGSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCG
LVYDDPACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICL
TGYQRSDREDIMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKL
VNHRWLEDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRSFRNKIVRSTLNP
KGSAGTSANHVVNAPIRSLTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVAAQGTPR
TRLAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASG
TPCSSKMVVSANHNVHSLNKTNFVEDHGDTDASKADLTTPSREILLANVLDSSNVARGRS
QEDYGATCTPDAAVGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSA
NRIGPLQGAEGSMMRADSSISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKK
CSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNPSEANNVDLGKQQSG
SSKSRSRTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATSLSATVDDVKRCPDFSF
QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGNGDTEMS
DALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLRQTGYLKKVASRKGMKA
STKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETAKDGPDSVNAAEHRTNS
SDKVLTDGASRISRRLQNVHTMKNDRHAAFNLESSKMISEENTGIGITPKKFVSNATTEG
HQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGKSLFDDLFPSQNIDHPK
KVSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSKLGKIGGAIVSAAKAVAS
RGIEESSCNINKVSSDQNSVKTDGMRDVSGLFSSDTSVIDRSENLNNSKLRCSKRNKSLS
LDHEKENMQDNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEP
TCFILSGHRQQRKDYRSILRRLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGK
WILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFYGMQ
IIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWVQQF
ISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKLLQNQQEVATDVLKPQED
GDPDDLSCSACGCTDRGEVMLICGNEDGSTGCGVGMHIDCCDPPLEAVPEHDWLCPQCEM
PKATKKSASRVASKSRVSKRKR
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcccatcagcggcagcgacgacgatgacgagcacctcttcgccggcgtccgc
ttcttcctcgtcgggttcgaccccctctcggagtcccagtatcggtcggagatggtgcgg
cgcagcggcgtggacgccgggaggttcggcagcgggtgcacccacgtcatcgtttgcggc
ctcgtctatgatgacccggcatgcgtggcggcgcgggcggaagggaaaaaggtcgtcacc
gagctttgggtggaagctagcttggatcggggaatgcttgccgatgccgatagggttatg
tattggccggtgcgagatttgaatggaatagcaggcagtgaatcattacgcatttgcttg
acgggctaccaaagaagtgaccgcgaagatataatgagcatggtttctttgatgggagcg
caattctccaaatctttgaatccagacgtagtcactcaccttatttgctataaatttgaa
ggtgagaagtatgaggctgctaaaaaggcgaagttgaagtttaactttaacatcaaactt
gttaatcaccggtggttggaagactgcttaaagtgttggaaaattcttccagtagatgat
tacagcaaaagtagttgggaactagagataatggaggcgcaagccaaggactcagaagat
gaagaagatgtaggccaaagatcatttagaaataagattgtcagatccactctgaaccca
aaaggtagtgcgggaacttctgccaaccatgttgtgaatgcaccaattcggtcactgact
atttcgagtggtaatatagggatggttttggaaaaacagccgaacattcctggagagatc
aggaaagcagaagatgctgtcaacaggatacatgatgtcgcagcccaaggcactcctaga
actagattggcaatgtctgctaacactgattttagcacacccagtcagattccatttatt
catagtgatagtagaggggatgctgcagtaagagatttgaaaaatgcagatcagatccag
gggaataaacacaaagatgttggcacaaagacacttgatgttacatccggtgcatcaggc
actccatgctcaagcaagatggttgtttctgctaaccataacgtgcattccttaaacaag
acaaattttgtggaggatcatggcgacactgatgctagcaaagctgacttgaccacccca
tccagagaaattctgcttgcaaatgtacttgattcatctaatgttgccagagggcgaagt
caagaggattatggagccacatgtactcctgatgcagcagttggtcagtcaaccattaat
gacaatgtcaccaataataatattggtttgaagtcaggaaacaatgcttcgctcaacatc
aacaacaaaagttctttgaaacccttagagaagtcggtactgcctgaacaatattcagct
aaccgtataggaccacttcagggggctgaggggagcatgatgagagctgattctagtatc
tcgacagcacgtaagggagataaaataattgctgatctagctggcgtccaggttctgaaa
ggtggtgaaaatatacaggatgagaatgtactggatggtgcatattcccaaaaaaagaag
tgctccatttccccagttttgttcaaagtgcaaaatggagatacggggaaagaaactggt
gcgttgaactctccttctgcaaataggcttagtgacacatctgaaccagcaatttggtca
tctgtaggaacaaatccaagtgaagctaataatgttgatttgggaaagcaacagtctggc
tcgtctaaatcaagatctaggactgcactcaagcatggtaatctggttgatggaatcaag
ctccctgaatattcttcaagtgagacaaatgcgcagcctccaccgaaaccaaaagaattg
ctcgccacaagcctttcagccactgttgacgatgtaaagagatgtccagatttctctttt
caaaacaaggatggtgattatgcacaagatagtggtaatgcattgaatcaagatggctcg
ccactgatgcgcaagacagaaaacgttcttgcaaaggtcagaacatctgacatatcttta
cacagttcaaggaaatcaaaacttgttccctcttctggaaatggtgatactgagatgtct
gatgcacttgatattgaaaaaaataaggcagcagtggcttcaaattgcaagcctgagaaa
gtggtacctgatgaaaatataaaagcagaccagcttaaagactttccaggtacttcaaac
aatgttctgcgccaaacaggttatttaaagaaagtagcatctcgtaaaggaatgaaagca
agcacaaagagacctcgtagtgctagcaaggtggttgatgagccagtagttgacgatggt
aagactaagacagtggtttctgagtcagagcctgataaaatgattgctcacaagcacatt
ggtgaaacagctaaagatggccctgatagtgtaaacgcagcagaacacagaacaaattct
tcagacaaagttcttacagatggagcgagtaggatttccagaagactgcagaatgttcac
accatgaaaaatgatagacatgcagctttcaacttggaatccagtaagatgatttctgag
gaaaatactggaattgggataacccctaagaagtttgtgagtaatgcaactactgaggga
catcaaacgaattcaccgaaaatgttacccaataccagtatgaggaatacatttgccaag
aggtctcgggtatctgacaccaaaatgactggtgaatcatcagctgataaaactgaaaca
gtggctggcaagtcactatttgatgacttatttccttcccaaaacattgatcaccctaaa
aaggtttcaagtagtgcaagtgctgacggctgtggatcactatcctgtaagaatgcatcg
cctgccagagttaggaatgcagttgccaagaggaaaataaaagctctagaagacaagtca
gacagcaagcttggaaaaattggtggtgccattgtatctgcagctaaagctgtggcatca
aggggaattgaagaaagctcatgcaacatcaacaaagtaagttctgatcaaaattctgtg
aagaccgatggaatgagagatgtatctggattattttcgagtgatacttctgtgatagac
aggtcagaaaatctgaataactctaagttgagatgcagcaaaagaaataaatctctttct
ttagaccatgaaaaggagaatatgcaagacaatggtactctcagttctaaatccaatggt
agaactgctattatgaattccaacttagatgcaaattcgatgaagcacggtgcaaatatg
ttcaatgagcccaatagaataaaaggaaacggacctggcaccttgatcacgcctgagcct
acatgttttattttaagtggacatcgccaacagagaaaggactatagatcaatacttcgg
cgcctgaaggcacgagtttgcagggattcacatcattggtcataccaagcgacacatttt
attgccccagaccctctcaagagaactgaaaaattctttgcagctgcagcagctggcaaa
tggatactgaaaactgattacttgacctcttgcaatgaggttggcaaattgttggacgaa
gaaccatttgaatggtctggtacaggccttaatgacggggaaacaatcagctttgaagct
cccaagaaatggcgtgttttgaggcagcagatgggccatggtgccttctatgggatgcag
ataattgtatatggacagctcgttagtccatcgctggatacagtaaagcgtgcagtacga
tctggcgatggcaccatcttagcaacctcgccaccgtacacacggttcttgaactctggc
gtcgacttcgctgtggtatcttcggccatgccaagtgcagacgcatgggttcaacaattc
atcagtcacgatattccttgtatcactgctgattatcttgttgagtacgtctgcaagcat
gggcatccgctcgacaggcatgttctcttcaacacaaacgatctggccaacaagtccctc
aagaaactactgcaaaaccagcaagaggtggccacagatgtactgaagccacaggaggac
ggagatcccgacgacctgagctgctcagcgtgcgggtgtacggaccggggcgaggtgatg
ctcatctgcggcaacgaggatggctcgaccggctgcggtgtaggtatgcacatcgactgc
tgcgaccctcccctggaagctgtcccagaacatgactggctgtgcccccagtgcgaaatg
cccaaagcgacgaagaaatctgcgtcacgcgtagctagcaaatcgagagtatccaagcga
aaaaggtga
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integrated database retrieval system
