Oryza glaberrima (African rice): 127767291
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Entry
127767291 CDS
T08853
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127767291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127767291
03009 Ribosome biogenesis [BR:
ogl03009
]
127767291
04131 Membrane trafficking [BR:
ogl04131
]
127767291
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogl04147
]
127767291
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
127767291
Ribosome biogenesis [BR:
ogl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
127767291
Membrane trafficking [BR:
ogl04131
]
SNARE
SNARE associated proteins
Others
127767291
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127767291
Exosome [BR:
ogl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127767291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
CDC48_2
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
nSTAND_NTPase5
ATPase_2
Parvo_NS1
AAA_18
AAA_lid_PRS2_C
ABC_tran
Viral_helicase1
Vps4_C
NB-ARC
AAA_7
NACHT
TsaE
IstB_IS21
DUF815
ResIII
Zeta_toxin
AAA_24
Zot
Motif
Other DBs
NCBI-GeneID:
127767291
NCBI-ProteinID:
XP_052148532
LinkDB
All DBs
Position
3:complement(2717373..2721629)
Genome browser
AA seq
809 aa
AA seq
DB search
MASQGEPSSSSDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFR
GDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKR
VHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEY
CIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEHIAKDTHGYVGADLAAL
CTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPNV
SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDDQSRL
QIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEMEKRRK
DNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRF
ADQPASGAGAAADPFASAAAAADDDDLYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccagggagagccctcctcctcctccgatcccaaggggaagaaggatttctcg
acggcgatcctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaac
gatgataactccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgc
ggcgacactgtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgct
gatgacacctgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgaga
gtgcgacttggtgatgttgtgtctgttcatcaatgcccagatgtcaaatacggcaagcgt
gtgcacatacttccaattgatgatactgttgagggcatcacaggaaacttgtttgatgcc
ttcctgaaaccgtacttccttgaagcataccgtcctttgaggaaaggagaccttttcctt
gttaggggtgggatgagaagtgttgaattcaaagttatagagactgaccctgcagagtac
tgcattgttgcacctgatacggagatattctgtgatggtgagcctattaagagggaggat
gaggaaagacttgatgaagttggttacgatgatgttggtggagttaggaagcagatggcc
caaatcagagaacttgttgagctcccattgcgccatccccaacttttcaagtctattggt
gtgaagcctccaaagggcatactgctttatggaccccctggctctggcaagaccctcatt
gctagagctgttgctaatgaaacaggtgctttcttctttctgattaatggcccggagatt
atgtcaaagctagcaggagaaagtgagagtaatctcaggaaggcatttgaagaagctgag
aagaatgcaccatcaatcattttcatcgatgagatagactccatagcaccaaagagagag
aagacccatggagaagttgagaggcgcatcgtttcacagctgttgactcttatggatggg
ctcaaagctcgttcccatgtcattgtcatgggtgctacaaaccggccaaacagtattgat
cctgctctcagaaggtttggtaggttcgatcgggagattgacattggtgttcctgatgaa
gttgggcggcttgaagttcttcggattcacaccaaaaacatgaagctggctgaagatgtt
gacctggaacacattgccaaagacactcatgggtatgtgggtgctgatcttgctgctctt
tgcactgaggctgctctccaatgcatccgtgagaagatggatattatagatcttgaggat
gagaccatagatgctgagatacttaactcgatggctgttacaaatgatcacttcaagact
gcactagggacaagcaacccgtctgctctccgtgaaactgttgttgaagttccaaatgtc
tcttgggaggatattggtggactggagaatgtcaaacgggagctgcaggagactgtccaa
tatccagtggagcatcctgagaaatttgagaagtttggcatgtctccatccaaaggtgtt
ctgttctatggccctcctggctgtggtaagactttgttggccaaggcaattgctaacgag
tgccaggctaacttcattagtgtcaagggacctgagctgcttaccatgtggtttggtgag
agtgaggccaatgtgcgtgagatttttgacaaggctaggcagtcagctccttgtgtcctc
ttctttgatgagcttgactcaattgctacccagagaggaagcagtgttggtgatgccgga
ggtgctgctgatagagtgctgaaccagttattgactgagatggacggcatgaacgcgaag
aaaaccgtgttcattattggtgctactaacaggccagatatcattgaccctgccttgcta
aggccagggcgtcttgatcagcttatctacattcctctgcctgatgatcaatctaggctg
cagatcttcaaagcttgcctccggaagtcacctgtggccaaggatgtagacctgaatgct
cttgccaaatacacccaaggtttcagtggtgctgatattacagaaatctgccagcgtgca
tgcaaatacgccatcagagagaacattgagaaggacattgagatggagaagcggaggaag
gacaaccctgaagccatggaggaggacgaggttgatgacattgctgagatcaaggcggct
cacttcgaggagtcgatgaagtacgctcgccggagtgtgagtgacgccgacatccgcaag
taccaggccttcgcccagactctgcagcagtctcgtgggttcggcaccgagtttaggttc
gctgaccagccagcgtctggcgccggcgccgccgctgaccccttcgcatccgctgccgcc
gcagctgacgatgatgatttatatagttag
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