Oryza glaberrima (African rice): 127767348
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Entry
127767348 CDS
T08853
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127767348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127767348
03036 Chromosome and associated proteins [BR:
ogl03036
]
127767348
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127767348
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127767348
PBAF complex
127767348
GBAF(ncBAF) complex
127767348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Myb_DNA-bind_7
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
127767348
NCBI-ProteinID:
XP_052148611
LinkDB
All DBs
Position
3:28789975..28796101
Genome browser
AA seq
942 aa
AA seq
DB search
MEPKSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHS
GPLTRAARQSPHKLAEEAAAAAAAGAGGSGAGGGKGGGDVIRLEGEEAPTEETPLVDEVF
EAVRSRGAGVHVVPTFAGWFSWKEIHPIEKQMLPSFFNGKSDKRTPETYLGIRNFIMLKF
HANPQLQLESKDLAELSIGEADAHQEVLKFLDHWGLINFHPFLPAGQEESKPEEAHGKSH
SEEKASVLEQLFKFESVQSYMIPLPKKGEVETPAPLPSLLPDPALVEDVVSAAEPSVEYH
CNSCSVDCSKKRYHCRTQADFDLCSDCYNEGKFDIGMAKTDFILMDSSEVSGASGTSWTD
EETLLLLEALEIFGGKWTEIAEHVATKTKAQCMLHFLQMQIEDRFHGDEDINQNIQENTE
QASAEKGAAEIPDKMEVEEKAEGKDTAGEKTPEKAEGNSVEAQTEDGNAIENKDANNSGG
TDSVKSLNTDEPKKSSDADPPKSSSDAEPVVKENSVDVDTSRENASNFAIDTLKSAFEAV
GYFPEHEGSFADAGNPVMALASFLAGLVEDDTATNSCRSSLKAISEVSPALQLATRHCFI
LEDPPSDVKDMSGNASTTSTDGDKRKDKDKTQDSIDSEVEGINKKGETVLSVEGKKSYPI
SPKGQDTDKKDECDEDPSVDPKHNNGKESDDPVSLDKSVSNNKKGINSSKDSVTPLNITN
QCGMITSQGFVTGNTMETSNPEMIEDKASSEVNPADDSSLEGKVEMKKTKDAVANATTAQ
EQKQSQILENGKMEEPKSTEDVAADEENSSRVTANLTDSITRLKRAAATAISAAAVKAKL
LADHEEEQIRQLAALMIDKLYRKVEAKVSFLTEVEHLVQRTREYTEKTRKKLLMERNAII
AARMGSLPSRPNQPGAAGNRLPAGYGGPIVRPPPNAMPRPSS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaagtcgtcggcgtcggcggctcatcaggggggcgacgcgccggccgaggcg
ccgcgcaggcgcggcggcggcgggaagcgcaagtcgggcgggtcgtcgttcaccccgtcg
aagaggcacgccaaggagcggaacgcggccttccacgtgccccctcacctgctgcacagc
gggccgctcacccgcgccgcgcgccagtcgccgcacaagctcgcggaggaggcggcggcc
gcggcggcggcgggggccggcggatcgggggcgggcggcgggaagggtggcggggacgtg
atccggctcgaaggggaggaggcgcccaccgaggagacgcctctggtggacgaggtgttc
gaggccgtccgatcccgcggcgccggcgtccatgtggtccctaccttcgccggatggttt
tcatggaaggaaatccacccaattgagaagcaaatgttgccttcttttttcaatggcaaa
tctgacaagcggacacctgagacatatttagggatcagaaatttcatcatgttgaaattt
catgctaatcctcagttgcagctggagtccaaagatttggctgagctatcgattggggag
gctgatgctcatcaggaagtgttgaagttcctggaccactggggcttgatcaatttccac
ccttttctaccagctggacaagaggagagtaagccagaggaggcccatggcaagtctcac
agtgaggagaaagcttcagtgcttgaacagctgtttaaatttgaatcagttcaatcatat
atgatccctttaccaaagaaaggggaagtggaaactccagctcctctgcctagtttgctt
cctgatcctgcactagttgaagatgtagtttcagcagccgagccctctgttgagtaccat
tgcaattcctgctctgttgattgctcaaagaagcgttaccattgccggacccaggcagat
tttgacctttgttctgattgctacaacgagggaaagtttgatataggcatggcaaaaacc
gatttcatcctcatggattcttctgaagtttctggtgctagtggtactagttggactgac
gaagagacattgcttcttttagaagctttggaaatttttggtggaaaatggactgagata
gctgaacatgttgctacaaaaacaaaagctcagtgcatgctgcacttccttcaaatgcaa
attgaggaccgctttcatggcgatgaagatattaatcaaaatatccaggaaaacacagag
caagcttcagcagaaaaaggcgctgctgaaatacctgataaaatggaagttgaagagaaa
gcagaaggaaaagatactgcaggtgagaaaactccagagaaagcagagggcaatagtgta
gaagcacaaacggaagatggaaatgctattgaaaataaagatgccaataattcaggtggc
acagattcagttaaatctctaaacactgatgagccaaaaaaatcttctgatgctgaccca
ccgaaaagttcatccgatgctgaacctgtagtgaaggaaaattctgttgatgttgatact
tctcgtgaaaatgcatcaaactttgctattgatacattgaaatccgcatttgaggctgtt
ggttacttcccagaacatgaaggttcatttgctgatgcaggaaatcctgttatggcactg
gcatcatttttagctggtcttgtggaagatgacaccgcaaccaattcatgtcgaagttca
ctaaaagctatctctgaggtttctcctgcacttcagttggcaactagacactgctttatt
cttgaggatccaccaagtgatgtgaaagacatgtctggcaatgcaagtactacaagcaca
gatggtgataaaagaaaagacaaggataagactcaagattcaattgatagtgaagtggaa
ggcataaataaaaagggagagacggttctatctgttgaagggaaaaaaagttatcccatt
tcaccaaaaggccaagacacagacaaaaaggatgaatgtgatgaggacccctcagtggat
cctaaacacaataatggtaaggagtcagatgatcctgtttctctggataaaagtgtgtcc
aacaacaaaaaaggtataaactccagtaaagattcagttactccactgaatattacaaat
caatgtggtatgataacttctcaagggtttgtcacaggaaataccatggaaacaagtaat
cctgaaatgatagaggacaaagcaagttctgaagtcaaccctgctgatgattcatcttta
gaaggcaaggttgagatgaagaagaccaaagatgcagttgctaatgcaactaccgcacag
gaacaaaagcaaagccaaatattggaaaatggcaagatggaagaacctaagagtactgaa
gatgttgctgccgatgaagagaacagctctagagtaaccgccaacctcacggattccata
actaggctgaagcgagcagccgctacagctatttctgcagctgctgtgaaggcaaaactc
cttgctgaccatgaggaagaacaaatccgtcagctggctgcgctgatgattgacaaactg
tatcggaaagtagaggcgaaggtgtcttttctcaccgaagttgaacacctggtccagaga
acaagagaatacactgaaaagactagaaagaagcttctgatggagcgaaatgcgataatc
gctgcccgcatgggttcattgccatctaggccaaaccagcccggtgcagccggcaacaga
ttaccagctggatatggaggccccatcgtgagaccaccaccaaatgcaatgccccgccct
agcagctga
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