Oryza glaberrima (African rice): 127767365
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Entry
127767365 CDS
T08853
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127767365
Spliceosome [BR:
ogl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
127767365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
DUF4523
Motif
Other DBs
NCBI-GeneID:
127767365
NCBI-ProteinID:
XP_052148640
UniProt:
I1PBR0
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All DBs
Position
3:14173648..14178670
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AA seq
464 aa
AA seq
DB search
MSSSVGGGGGQQFRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQ
AFVEFTDINQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTI
EGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIP
RYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDTLQPAVGADGRK
VEAEGNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASV
AKEALEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAMQAVPQPPGVPTTS
AGWQGNPQAGGAYAPPGAAAPNHGTTGQVPNWNPGNSGYAPAPGAYPGQMYSSPMQYGAS
GGFSAPAAPPQELHTSQQMPPPQYGNQPGPAGAPGTGQPHPYYR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcggtcggcggcggcggcgggcagcagttccggtacacgcagacgccgtcc
aaggtgctgcacctgcggaacctgccgtgggagtgcgcggaggaggagctcgtcgagctc
tgcaaccccttcggccgcatcgtcaacaccaagtgcggcgtcggcgccaaccgcaaccag
gccttcgtcgagttcactgacattaatcaagctatttcgatggtttcttactttgcatca
tcttcggaaccagcgcaaatccgaggcaaaactgtttacattcagtattcaaacagacaa
gaaatagttaacaacaagagccctggagagactgctggaaatgtgttgctagttactata
gaaggtgttcaagcaaacgatgtcaccatcgatgtgatccatctggttttctcagctttt
ggatttgttcacaaaatagccacttttgagaaggctgcaggttttcaggcactgattcaa
tacacagatgcagccacagcttctgcagcaagagaagccttagatggaagaagcatccca
aggtacttgcttccagagcatgtaacatcttgttgtttgcgtatttcgttctctgcgcat
aaggatctgaatatcaagttccagtcacatcgcagcagggattacaccaacccttacctt
ccggttaattcatctgctatagatacgttgcagcctgctgttggtgccgatggaaggaaa
gtggaagctgaaggcaatgttcttctcgcatcaattgaaaatatgcaatatgcagtcacg
gtggatgttctccatactgtgttctctgcatttggtacagtccagaaaatagctattttt
gagaagaacggtggaacacaagctttgattcagtaccctgatgtaactacagcttcagtt
gcgaaggaagcattggaagggcattgcatctacgatggtggctactgtaagctccacctg
tcatattctcgtcatactgatctcaatgtaaaggcacacagtgacaagagcagggattac
acaatccctcaaggtgcgatgcaagcagtaccacaaccgcctggtgtaccaacaacatct
gctgggtggcaaggtaatccacaagccggtggtgcatatgcaccacctggagctgctgct
ccaaaccacggcacaacagggcaagtgccaaattggaatcccgggaactctgggtatgct
ccagctccaggagcatatccaggtcaaatgtactcgtcaccaatgcagtatggcgcatca
gggggcttctctgctcctgctgccccaccacaagagttgcatacttcgcagcagatgccg
ccgcctcaatatggaaatcagcctggaccagcaggtgcaccaggaaccgggcaaccacat
ccatattatcgctaa
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