Oryza glaberrima (African rice): 127767372
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Entry
127767372 CDS
T08853
Name
(RefSeq) nuclear pore complex protein NUP93A-like
KO
K14309
nuclear pore complex protein Nup93
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127767372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127767372
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127767372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_12
TPR_2
TPR_8
TPR_1
Motif
Other DBs
NCBI-GeneID:
127767372
NCBI-ProteinID:
XP_052148647
UniProt:
I1PBA6
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All DBs
Position
3:complement(12507396..12515323)
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AA seq
870 aa
AA seq
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MAGVGGSSSGGGDVEMGGWSELLHSSTKLLEQAAPTPHFPPLQRNLDQLEVLSTKLKAKT
VRAEAPVQSLSATRLLAREGINAEQLARDLKSFELKTTFEDVFPSEATTVEEYLQQLHEM
AIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSLSRLSTLPKRNTNLMASGISR
PALMPSSASSPQSSSGLPSKEVMPIPNKTIIENKSSVYAAVVRDLNDARGRSLPFGPATA
FRAAYESLSVGAVGTKSVTMHKVWHLIQALVGEGSTHRNISRKMSLVIGARRHLEWGHEK
YILETINSHPALAALGGSVGNLQKIRAFLRVRLRDHGVLDFDATDLRRQPPVDTTWQQIY
FCLRTGYYDEARQVAQSSRAAFNFAPLLVEWITTNGAVSPETALTASEECDKMLRMGDRP
GRPGYDRKKLLLYAMICGCRRQIDRLLKDLPTLFNTIEDFLWFKLSALREYTSASSSNVS
NEGLVPYTLEDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAILYLSKEVGEEGY
HVDAVHISIALSDHGVLPDGVGSGQKMGIMDACAEAASIIRQYGSIYLRNGNLDLALEYY
AQSAAAMGGGEVSWIGRGNADQQRQRNLMLKQLLTEILLRDGGIQLLLGPSGMGEEGELK
KYMMDWRSRQQFLLEAAHQCHEAGLYDKSVEIHKRVGAFAMALQTINKCLSDAICAMARS
MLDGESRAAALIHSGNEIMETARYSEASVQDKDLISEQQTVLRQLEAILHIYRLARAGQT
VDALRETIKLPFLHLDPQAPNVTVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLR
AVKSKIANLVASNMSRNWPQDLYQKVAQCI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcggcggcagcagcagcggcggcggcgacgtggagatgggcgggtggtcg
gagctcctccactcctccactaagctcctcgagcaggccgcccccaccccgcacttccct
cccctccagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacg
gtgcgcgccgaggcgcccgtgcagtcgctctccgccaccaggttgttggcgcgcgagggg
atcaatgcggagcagctcgccagggacctcaaatccttcgaacttaagaccacatttgag
gatgtttttccatctgaagcaactactgtcgaggagtacctgcagcagcttcatgaaatg
gcaatcgtctcatccattcaagaagcacaaaaggacaacttaaggagttttaacaattat
atgatgcaagttctcgaggatgattggcagaaggagaagcgagacttcttgcagagtcta
agccgactctctacattaccgaaaagaaacactaatctcatggccagtgggatttctcgt
cctgctctgatgccatcttcagcttccagtccccaatcttcgtccggtctgccatctaag
gaagtcatgcccatacctaacaaaactataattgaaaacaaatcttcagtttatgctgca
gttgtgagagatcttaatgatgctagagggcgcagcctaccttttggtcctgctacagca
ttcagggctgcttatgagtctttatctgttggtgctgttgggacaaaatcagtgaccatg
cataaagtgtggcatttaattcaggcattagttggggaagggtcaactcatcgaaacatt
tcaagaaaaatgtcactagtgattggtgctagacgacaccttgagtggggtcatgaaaag
tacatacttgagaccatcaatagccatccggctctagctgctcttggtggatctgttggc
aatcttcagaagattcgcgcatttcttcgggtccgtttgcgggatcatggtgtgctagac
tttgatgcaactgatctgcgtagacagccaccagtggacacaacatggcagcagatttat
ttctgcttgagaactggatactatgatgaggcaagacaagttgcccaatcatctcgtgct
gcattcaactttgctcccctgcttgtagaatggattactactaatggtgctgtatcccca
gagactgctctgacagcttctgaggaatgtgacaaaatgctgagaatgggtgatcgacct
ggccgtcctggttatgataggaagaagttgctcctttatgccatgatctgtggttgtcga
cgtcaaatcgacagattgcttaaagatctgccaacacttttcaatactatagaggatttc
ttgtggttcaaattgtcagctctgcgggagtacaccagtgcatcttcttctaatgtttca
aatgaaggcttggtgccttatactctggaggatctgcaaagttacttaaacaaatttgaa
ccatcatattatacaaagaatggaaaagaccccttggtctatccatatgttctgctgtta
agcatccaattgcttccagcaattctttatttgtctaaagaagttggagaggaaggatac
catgtagatgctgtgcatatttcaattgctttatctgatcatggtgttctccctgatggt
gttgggtcaggccagaagatgggtatcatggatgcttgtgcagaagctgccagtataata
cggcagtatggctctatttatttgcgtaatggtaaccttgatttggccttggagtattat
gcacagtctgctgctgcaatgggtggaggagaggtatcatggattggtcgagggaatgct
gatcagcagcggcagcgaaatctaatgttgaagcaactgctgacagagatattactaagg
gatggtggcattcaacttttgcttggtccaagtggaatgggggaagaaggagaattaaag
aagtatatgatggattggagaagcaggcagcaattcttacttgaagctgcccatcagtgt
catgaggcaggcctctatgacaaatcagtggaaattcataaaagagttggagcttttgcc
atggcacttcagacaataaataagtgcctgtcggatgcaatatgtgccatggcgcgcagt
atgttagatggtgaaagtcgtgctgctgctctaattcattctggtaatgaaattatggaa
actgccagatattcggaagccagtgttcaagacaaggacctcatatctgagcaacaaact
gtactgagacagcttgaagctattctccatatctataggcttgctcgagctggacagact
gtagatgctttgagggaaaccatcaaactcccatttcttcatttggatcctcaggctcca
aatgtgacagttgatgtattcagaaacttgtcaccgcatgttcaagcttgtgtgccagat
ctcttgaaggttgctctaaattgtatggacaatgttagagatactgatgggaccttgcgt
gcagtcaagtcaaagatcgcaaacctcgtggcaagcaacatgagcaggaactggccacag
gatttgtatcagaaggtggcgcagtgcatatga
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