Oryza glaberrima (African rice): 127767489
Help
Entry
127767489 CDS
T08853
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127767489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127767489
Enzymes [BR:
ogl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127767489
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127767489
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127767489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
127767489
NCBI-ProteinID:
XP_052148801
UniProt:
I1P7X8
LinkDB
All DBs
Position
3:3384251..3389871
Genome browser
AA seq
607 aa
AA seq
DB search
MLTVLRVHLPSEIPIVGCEITPYVLLRRPDGGISTEDVHEAIPLDGHFMRYKWYRIQSDR
RVAVCNVHPTEQATIQCLGCLKSKIPVAKSYHCSAKCFSDAWQHHRVLHERALSALNENG
NEEEELFGRFGSGNAGIINASLSGSTSNIGQSSSVNNGPTPVYPTGTEKNSGETWFEVGR
SRTYTPTADDIGHALRFECVAVDSETRSSVGAPTSIMTSRVIPAPTPTPRRLIPVNSADV
MGHFDLDSRNSSFGTFTVLSYNILADTYATSDTYSYCPTWALSWPYRRQNLLREIIGYHA
DIICLQEVQSNHFEEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHV
KKYEVEFNKAAQSLTDAIIPAAQRKVALTRLIKDNIALIAVLEAKFGSHGADNPSKRQLL
CVANTHINVHQDLKDVKLWQVNTLLKGLEKIAVSADIPMLVCGDFNATPGSTPHGLLAMG
KVDLMHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGAGYDLEHQRRRMDPATNEP
LFTNCTRDFTGTIDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR
CKPRVRR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccgtcctgcgggtgcacctcccgtcggagatccctatcgtgggctgcgagatc
acgccctacgtgctcctgcggcgccccgatggcggcatctccaccgaagatgtgcatgag
gccatccctctggatgggcactttatgcggtataaatggtaccgcatacaaagtgatcga
agagtcgctgtctgcaatgttcatccaacagaacaggcaacaatacagtgcttggggtgt
ttgaagtcaaaaataccagttgctaagagctaccattgttctgctaagtgcttctcagat
gcctggcaacaccacagggtgttgcatgaacgtgctttgagcgctttaaatgaaaatggc
aacgaagaggaggagttatttggccgatttggtagtggcaatgcagggattataaatgcc
agtttatctggctcaacatcaaatattggacagagctcaagtgttaataatggacctaca
cctgtgtatcccactggaactgaaaagaattctggtgaaacttggtttgaagtgggacgt
tcacggacgtatacgccaactgctgatgatattgggcatgccctaagattcgaatgtgta
gcagtggattcagaaacaaggtcgagtgtgggagctccaacttcaatcatgacatctcgt
gtaattcctgctccaacacccactccgcgtcgtctgataccagtgaattcggctgatgta
atgggacactttgatctagacagccgaaattcttcttttgggacattcacagtgttgtct
tacaatattcttgctgatacatatgcaacaagtgatacatacagctattgcccaacttgg
gcactttcatggccttacagaagacaaaatttgctgcgtgaaataattggttaccatgcg
gatatcatctgccttcaggaggtacaaagtaaccactttgaagaattctttgcaccggag
cttgacaaacatggatatcaggcactgttcaagaaaaggacaactgaggtgtacactggc
aatctccaatcaattgatggatgtgctactttctttcgaagggacaaattttcacatgtc
aaaaaatacgaggttgagtttaataaggctgcacagtctttaactgatgcaattattcca
gctgctcaaagaaaagtggctttaactcgattgattaaggataacattgcgttgattgca
gttttagaagctaagtttggtagccatggggctgataaccctagcaaaagacagctcctt
tgtgtggcaaatacgcatatcaatgttcaccaagacctcaaagatgtcaagctatggcag
gttaacaccctcctaaaaggtttagaaaaaatagctgtcagtgcggacattccaatgctg
gtctgtggagatttcaatgcaacccctggaagtactccacatgggcttcttgcaatgggg
aaagttgatctgatgcatccagatctagcaatagatcctcttggaattttgcgaccagca
agcaagttgacacaccagcttcctctggtgagtgcgtactcttcatttgcaaggatggtt
ggtgctggttatgatttggagcaccagaggaggagaatggaccctgcaacaaatgaacca
cttttcacaaattgcacgagggatttcactgggaccattgattacatattttacacagcg
gattcgttatcagtggagtcgttgctggaacttctggatgaggatagcttacggaaagac
actgcgcttccttcacctgaatggtcatcagatcatatagcactcttagcagaatttcgg
tgcaagcctagagttagacgatga
DBGET
integrated database retrieval system
