Oryza glaberrima (African rice): 127767787
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Entry
127767787 CDS
T08853
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127767787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127767787
03012 Translation factors [BR:
ogl03012
]
127767787
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127767787
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127767787
Translation factors [BR:
ogl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127767787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
T2SSE
ATPase
AAA_16
ABC_tran
AAA_19
Myosin_head
Motif
Other DBs
NCBI-GeneID:
127767787
NCBI-ProteinID:
XP_052149192
LinkDB
All DBs
Position
3:complement(30283471..30290408)
Genome browser
AA seq
1150 aa
AA seq
DB search
MRGGLRRGLGILLLPLSSSPSRAPRPPVPLAALLVYHRRLDVFARRSFCSSGGGYAVEQF
SDDEYDHEYEDHRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSEMYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPD
KCGTGNGSEMAEKAENVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKML
EFRKSLPAYKEKERLLAAIARNQAIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIIC
TQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRN
LNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPTI
HIPGFTYPVRAHFLEDILERTGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE
DALKTSSFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERSGAVLVFMTGWDDISC
LKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKIVLATNMAEASITIND
IVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVQNAVEFLKMIGALDE
NENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKRDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSYI
LKDAGLVDSDANTNNSLSHNQSLVRGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLYA
NSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLDG
YIDLFMDPSLCECYLQLKEELDKLVQKKLEDPSFDIHKEGKYILYAAQELAAGDLCEGRF
VFGRETSRARLSSSDDTKGNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIV
EFKGMQFAGKPKRNKQLAERDAAIEALGWLTQTSGTKLQDDGDDSPLDLTDNMLKLLSRP
RRRSRNNSRK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcggcttgcgccgcgggctgggcatcctcctcctcccgctctccagctcgccc
agccgggcgccgcggccgccggtcccgctcgctgctctgctcgtctaccaccgccgcctc
gatgtcttcgcccgccggtccttctgcagctccggcgggggctacgccgtggagcagttc
tccgacgacgagtacgaccacgagtacgaggatcaccggccgtcgtcgtcggtggcgaac
atcgacgagtggaggtggaagctgagcatgctgcagcgcaacgcggaggagcaggagatc
atctccagagaccggagggatcgccgggactacgaccagatcgccaacctcgccaagagg
atgggcctctacagtgagatgtatgggaaggtcattgttgcgagcaaggtcccgctgccg
aattacaggccggacctggacgacaagcggccacaaagagaggtggtgattccattaagc
ttacagaggagggttgaaggacttgtgcaggagcaccttgatcgtgcactcttgccggat
aaatgtggaactggaaatggttctgagatggctgagaaagctgagaatgtgaacctggat
gagcagcaggattcccttctcgatcgatcggtcatggagaagatccttcagaggaagagc
atacggatgcgcaattttcagagaagttggcaggaatcacctgaaggagttaagatgcta
gaattccggaaatcacttcctgcatacaaggaaaaggaaaggcttctagcagccattgca
cgcaatcaggctatagtgatatctggagagacagggtgtggcaaaacaacccagttgcct
caatttgtattagaatcagagatagaatctggccgtggggccttttgtaatataatctgc
acacaacctcggagaatttctgcaatggcagttgcagagagagtatccactgagagagga
gagaatcttggtgaatcggttggctacaaagttcgattggagggaatcaaaggaaaagac
acacatttgcttttctgcacaagtggtatattactacgacgattgctcagtgacagaaac
ctgaatggagtaactcatgtatttgttgatgaaatacatgaaagaggcatgaatgaagat
ttcttattgattgtcctaaaagacctattatcacgacgccgtgatttgaggttgatcttg
atgagtgctactctaaatgcggaactgttctcaagttattttggaggagcaccaactatc
catattcctggattcacatatccagtgagggcacattttctggaagatatattagagagg
actggctataagttgacctcaagcaatcaacttgacgattatggacaagataaagtctgg
aaaactcagaggcaactattacctagaaaaaggaaaaatcaaatcacaacgcttgttgag
gatgcccttaaaacttctagctttgagacctatggatcgaggacacgcgattctctgtca
aattggaatcctgattgcatagggtttaaccttatagaagctgttctttgccacatatgt
cgtaaagagcggtctggtgcagttctagttttcatgaccggatgggacgatatcagttgc
ttgaaggatcaactaaaggcacaccctttgttgggcgaccctaacagagttttactgctt
gcatgccatggttccatggctacagctgaacagaggttaatctttgagaagccacctcct
aatgttcggaagatagtgcttgccactaacatggcagaagcaagtattacaataaatgat
attgtttttgtcgtggattgtggaaaggcaaaggaaacgacatacgatgcactaaataac
actccctgcttgcttccctcatggatttcaaaggcttctgctcgtcagaggaggggcaga
gctggtcgtgtgcaacctggagaatgctatcacctctaccctagatgtgtgtatgatgca
tttgcagattaccagcttcctgagctccttagaactccattgaattcactatgtttgcag
ataaaaagtttgcaagttggcagcattggggagtttctatcagctgccttacagccccca
gcaccactagctgtccaaaatgcagtggaattcctgaaaatgattggagcattagatgaa
aatgagaacctaactgatctaggaagatacctttccatgcttcctgttgatccaaagttg
gggaagatgcttataatgggtgcagttttccgctgcattgatcctatacttaccgtggtt
gctggattgagtgcccgggatcctttcctgctgccacaggacaagagagatttggcagga
accgccaaatcaagattctcagcaaaagattatagtgatcatatggccctagtccgggct
tatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaat
ttcctttctgctcaaacacttcaagccattcactctcttcggaagcaattcagctatata
ttaaaggatgctggtttggtagactctgatgcaaatacaaataatagtttgagccataat
caatcattggtccgtggtatcatatgttctggacttttcccaggcataacatcagttgtg
catagagaaaactctatgtcgttcaagaccatggatgatggccaagttcttctttatgct
aattcagtgaatgctaagtaccagaccatcccttatccatggctggtctttggtgagaag
gtgaaggtaaatgctgtcttcatccgtgactcaaccggagtatcagattccatcctgatc
ttatttggtggtgctgttacaaaaggaagcatggctgggcacctgaagatgctcgatggt
tacatcgatttgtttatggatcctagcctgtgtgaatgctacttgcaacttaaagaagag
cttgataaacttgtacagaagaagcttgaagaccccagcttcgacatccacaaggaagga
aagtacatcttatatgccgcacaagagctcgctgcaggcgacctatgcgaaggaaggttt
gtgtttggccgcgagacgagcagagcaaggctcagcagcagcgacgacaccaaaggcaac
attatcaaggacggaatgaaccccaagagcctgctccagaccctgctgatgagggccggc
cacacccctcccaagtacaagacaaagcacctcaagaccaacgagttcagggccatagtg
gagttcaaagggatgcagtttgccgggaaacccaagaggaacaagcagctcgccgagagg
gacgccgccattgaagcgctgggatggctgacacagacctcagggacaaagcttcaggat
gatggcgatgattcccctcttgacctgacggataacatgctgaagttgctcagtagaccg
aggcggcggtccagaaacaattccaggaaatga
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