Oryza glaberrima (African rice): 127767870
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Entry
127767870 CDS
T08853
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127767870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogl03032
]
127767870
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127767870
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
127767870
DNA replication proteins [BR:
ogl03032
]
Eukaryotic type
DNA Topoisomerases
127767870
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
127767870
FA (Fanconi anemia) pathway
127767870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-GRF
zf-C4_Topoisom
Motif
Other DBs
NCBI-GeneID:
127767870
NCBI-ProteinID:
XP_052149294
LinkDB
All DBs
Position
3:complement(3271522..3288858)
Genome browser
AA seq
928 aa
AA seq
DB search
MHHGGGGGAIRVLNVAEKPSVAKSVAEILSRPSGGMRSREGRSRYNRVFEFDYSIGGRAC
HMLVTSVTGHLMELEFDDRFRRWHSCDPADLFHAPVRKSVPQDKQDIKRTLEEEARKCQW
LVLWLDCDREGENIAYEVIDICAGANSRLNIWRARFSALIDREIHEAVQHLDRPNKLFAD
AVDARQEIDLRIGASFTRFQTMLLKDAFVLDDTGDDRNIILSYGPCQFPTLGFIVERFWE
IQAHEPEEFWTINCSHTSDEGTASFGWIRGHLFDYSSAVVIYEMCVEEPMATVQNVRNQE
KLKYPPYPLSTIELQKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDNFSPNTDLHS
IVHEQVAHPNWGTYAQRLLDPEARLWRNPSNGGHDDKAHPPIHPTKFSAGETNWTDNHKK
LYELVVRHFLACCSQPAVGAETTVEIDIASEQFNASGRVVLAKNYLDVYRFDSWGGTLLP
TYIIGQQFVPTTLTLDSGMTRPPPLLAEADLLGCMDKAGIGTDATMHDHIKKLLDRCYAT
KDANTRFSPTNLGEALVMGYDEMGYELWKPYLRSMMEADMKSVSIGTKSKSEVLENCLQQ
MKACFLDARANKVKLFDAMGTFFARSSRPVNETQNSIETVRPCAACNESEMFLKQRPTGE
FMVGCRGFPQCRNVVWLPRSLSGAAVTDQVCPTCAPGPVYKIQFKFRRRDIPPNFDVDHL
GCIGGCDDILKELMELSRFGSHSQTATPARNQSQTASGVRQGSSRQDLHTSFHPAVQFTN
GQTPVVNSQGFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKCQNLACGF
FAWEDDVENSAPRGRGGRGRGGRSGSRQSSASASAGRRGGTQGRGRRGRGRNADGMMFVA
ATGEPVYGSCFICGDPTHFANVCPNLGR
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgcaccacggcggcggcggcggcgcgatccgcgtgctgaatgtggcggagaagccgtcg
gtggcgaagtccgtcgcggagatcctgtcgcggccgtcgggcgggatgcggtcgcgggag
gggcggtcacggtacaaccgcgtcttcgagttcgattactccatcggcggccgcgcctgc
cacatgctcgtcacctccgtcacggggcacctcatggagctcgagttcgacgaccggttc
cgccgctggcactcgtgcgaccccgctgatctcttccacgcccccgttcgcaagtccgta
ccccaggataagcaagacataaaaagaacattggaagaggaagccaggaagtgtcagtgg
cttgtgctttggcttgattgtgatagagagggtgagaatatcgcatatgaagtgattgat
atatgcgcaggtgccaacagccgcctcaacatttggagagctcgtttctcagctttgatt
gacagggaaatccatgaagctgtgcaacatcttgacagacccaacaagctctttgctgat
gctgttgatgcaagacaggaaattgaccttcgcatcggtgcctccttcacaaggttccag
acaatgctgctgaaagatgcatttgttcttgatgacactggtgatgataggaatataatt
ctgagttatggtccttgccagtttccaaccctaggatttattgttgagcgtttctgggag
attcaagctcatgaacctgaagagttctggacaataaattgttcccacacttcagatgaa
ggcactgcatcttttggttggatacgtggtcatttgtttgattactcatctgctgttgtg
atctatgaaatgtgtgttgaagaaccaatggcgacagtgcaaaatgtaaggaatcaagag
aaactaaaataccccccatatccactaagtaccatagagcttcagaaacgtgcctctagg
tacttcagaatgagttccgagcacacaatgaaggtggctgaggaactttatcaagctgga
tttattagttatcccaggacagagactgataacttctctccaaacactgacctacattcc
atcgtacatgaacaagtggctcatccaaattggggaacatatgctcagcgtcttttggat
cctgaagcaagactttggagaaaccccagcaatggtggtcacgatgacaaggcacatcct
cctattcatccaacaaaattttcagctggggaaacaaattggactgataatcacaaaaaa
ttgtatgagcttgttgttcgccatttccttgcttgttgctcccaacctgcagttggagct
gaaacaactgtggaaattgacattgctagtgaacagttcaatgcatcagggcgcgttgtt
cttgctaaaaattatttggacgtatatcggtttgactcatggggcggtacattacttccg
acatacatcattggacaacagtttgttccaacaactttaacgcttgattctggaatgact
cgcccacctcctctgcttgctgaagctgacctccttggttgtatggataaagcaggaatt
ggcactgatgcaacgatgcatgatcacataaaaaagttacttgaccgttgttatgcaacc
aaagatgcaaatacacggttctccccaacaaatctaggcgaggcattggtgatgggttac
gatgaaatggggtatgagctttggaaaccttatttaagatcaatgatggaagctgatatg
aaatcagttagcattggtacaaagagtaaatcagaagtacttgagaattgtttgcagcaa
atgaaggcttgttttcttgatgcaagggcaaacaaggtgaaactctttgatgcaatggga
acattctttgcaaggtcaagtagaccggtcaatgagacacagaactccatagaaactgtg
agaccatgtgctgcatgcaatgaatctgaaatgtttctgaagcaaaggccgactggcgaa
tttatggttgggtgtcggggcttccctcaatgtagaaatgtagtttggctcccacgatct
ctttcaggggctgctgtgactgatcaagtttgtcctacctgtgctccaggtccggtttat
aagattcaatttaagtttcggcgaagggatattccaccaaattttgatgtcgatcacctc
ggttgtattggtggatgtgatgacatactcaaagagctcatggaattaagtagatttgga
agtcatagccagactgcaacaccagcaagaaatcagagccagactgcaagtggtgtaagg
caggggtcttcaaggcaagatttacatactagctttcatccagccgtgcaatttactaac
ggacaaacacctgttgtgaattctcaaggttttcgttcaacccatacccaaagctcagga
aatgcatcaggtcaagtacagtgcacatcatgtcgagaaccctgcgtattgcgaactgct
aatacagaggctaacagggggaggaagttctataaatgccagaatcttgcatgcggcttt
ttcgcatgggaagacgatgtggagaactctgcgccgaggggccgtggcgggcgtgggcgg
ggcgggcgcagtggcagcaggcaatcatctgcatctgcatctgcagggcggagaggcggc
acccaagggcgaggcaggaggggcagaggacggaatgctgatggcatgatgttcgttgcg
gcgacgggcgagcccgtttacggcagctgcttcatctgcggcgaccctacccacttcgct
aatgtctgccccaacctcgggagatag
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