Oryza glaberrima (African rice): 127768263
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Entry
127768263 CDS
T08853
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127768263
09123 Folding, sorting and degradation
03018 RNA degradation
127768263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127768263
03041 Spliceosome [BR:
ogl03041
]
127768263
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127768263
mRNA cycle factors
Stress granule specific factors
127768263
Spliceosome [BR:
ogl03041
]
Complex C
Other components
Complex C specific factors
127768263
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_RdRP1_2
RRM_10
RRM_3
DUF1866
Motif
Other DBs
NCBI-GeneID:
127768263
NCBI-ProteinID:
XP_052149767
UniProt:
I1PA17
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All DBs
Position
3:8929284..8933949
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AA seq
647 aa
AA seq
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MAAQEMEVMMVAMAAEAPVAVEEEAVPAAAGGLNATVPALYVGDLHESVREEHLLEVFGK
IGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLNHSLILDKPIRVMWSNRDPDA
RRSGVGNVFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESAD
ASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKYTNLYMKNLDDDIIEELIKLKFSQYG
LVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQY
LQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDALRERFNEFGNITSAKIMRDEKGISKG
FGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAELATMVGATSP
VIPTGYPQFYFAHPSTHFPQSPGRQGFMYPPIGISQEWRHNMFPSSHNIQQIHSPIMRNT
PRQYRNNRGRMNGNMMHFHHTVNYVPHAQPAKEFMSMSRQRFSHAKYIPNDVMANGLAIH
HGDSISSMNDAFNNLLATAPPEEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVI
MLLYSSNMLSAKIEECVKLLQAVKPKPEDQEALHPGFLLDSAGVNAN
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggagatggaggttatgatggttgcgatggcggcggaggcgccggtggct
gtggaggaggaggcggttccggcggcggcgggggggctaaacgcgacggtgcccgcgttg
tacgtgggcgatctccacgaaagcgtgcgggaggagcacctgctcgaggtgttcggcaag
attggcaccctcacgtccgtgcgcgtctgccgcgacaatgccacgagcaactccctcaga
tatggatacgtcaattacctctcccaggctgacgctgcaattgctttggagaaactaaat
catagccttattttggataagccgatcagagtaatgtggtctaaccgagatccagatgct
aggagaagtggggttggaaatgtgtttgttaagaatcttaatgatttagttgacaatgta
agtctacaagaattattttgcaagtttggagatatattatcttgtaaagtcgctaaaaat
gaggatgggacaagtagaggctatggatttgttcaatttgcgttgcaagaatcagcagat
gcatcaattcaaaatcttaacaactctcatttttgtggcaggcaattgcatgttgctaca
tttattaagaagagtgaacgatctacaaacaatgatgacaaatatactaacctatacatg
aagaaccttgatgatgatataatagaggaacttattaagttgaagttctctcagtatggt
ttagtaattagtgtaaagataatgaaaagagatgatgggacatctaagggctttgggttt
gtaagttttcaaaacccagaaagtgccaaaagagcaaaagaatccatgaacgggatgcta
cttggatcaaaaaccttgtatgtagcaagagctcaaaagaaagctgaaaggaaacaatat
ttacaacgcttacacgaggagaagagaaatgaaataatcactaagagcaatgggtcgaat
gtctatataaaaaatattaatgatgaagttggcgacgatgctctccgtgaacggttcaat
gaatttggaaacattacatcagcaaagattatgcgtgatgaaaagggtattagcaaagga
tttggatttgtatgttacaacacacctgaggaagcaaaatgtgctgtaagcaacatgcgt
ggtgtaatgttttatggcaaaccattgtacgttgctattgctcaaaggaaagaggaaaga
cgagccaaactagagcaacgttttgctgagcttgcaacgatggttggagctacaagtcct
gtcatacccacaggatatcctcaattttactttgcccatcctagtacacatttccctcaa
agtccagggagacaaggatttatgtatccacccatagggattagtcaagaatggaggcat
aacatgtttccctcgtcacataatatccaacaaatacattcaccgattatgcgaaatact
ccacggcaatatagaaacaacaggggaaggatgaatggaaatatgatgcattttcaccac
actgtgaactatgttccacatgcgcaaccagctaaagaattcatgtccatgtcccgacag
cgatttagccatgctaagtatattccaaatgacgtcatggccaatggattggctattcat
catggtgactctatttcatcgatgaatgacgcttttaacaacctgctagctactgctcca
cccgaggaacagaagaacatgcttgggaatagactatatccattggttgagagacatcat
cctgaccttgccagtaaaatcaccggaatgttacttgagctaggtaattctgaagtgatc
atgctactttactcatcaaacatgttgtctgccaaaatagaggagtgtgtcaaactgctc
caagcggtaaaacccaaacctgaagatcaagaggccctgcaccctggtttcctcctagac
tctgctggtgtaaacgccaactaa
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