Oryza glaberrima (African rice): 127769017
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Entry
127769017 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127769017 isoform X1
KO
K06100
symplekin
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127769017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127769017
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127769017
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127769017
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127769017
U7-dependent histone pre-mRNA processing factors
127769017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
127769017
NCBI-ProteinID:
XP_052150664
LinkDB
All DBs
Position
1:complement(26132061..26147166)
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AA seq
1293 aa
AA seq
DB search
MEFEADGARWPEPRGDAAGAPPLERGDAPSPRFDSSRALRLLRELGSNVTEDLVVLMPNL
LSFLKHDDPAVVNQSIASGTNLFAAVLEEMTLQINKCGRVDAWLEEMWAWMKQFKDAVHN
LIHESVPVATKLFAVKFIETWILCFAPQSKSDRMQPTEGRNRRLFDSSRLSQFHPSLNPA
VLEADANRALILLVDILQSACAHQGSFLVGTINSLAAIAKNRPVYYERILPVLLGFDPSL
EVAKRAHPASLRYSLKTAFLGFLRSPCQAMIESKDTLVRQLRVLSPGEATEQIIRQVEKM
TRNIERASRASKDEPSTLDMPYGDVSRKYPAARSSDAFATADGVAKRARFDTSAALNPPF
QGASDYSNMQVDNEANVDHSSDPALLNCDMSPVEKMIEMIGALLAEGERGAESLGILIST
VEADVMADIVIETMKHLPETSILLATSNNGQQKKIQSSSSPLTENLPANSHSMPYSTQFT
LPADGVSMSMSDVPVVSGVHDSKRDPRRDPRRLDPRRTVAPAATSSIHVKGETTGVHQTN
NLSNVPYPVSGKVENSLDYSGDLSKNEDVQQTSCQPNQSLPKENSEILDDALELEPKFEV
QALADVGFHSSDVDKEMVNPLSPEATSNNELDSVELEVDPFSPVLKASTPEDTTNHDLPV
LPSHLELSDDEKILLHKLAIRRIIDDYKKNSVNTRFSLLAHLIAQSTADDNIMDLIQRHI
IYHYHDQGHELAMHVLYQLHSVSVADSPESTAPASKNYENFFISLARSLIHSLPASDKSF
SKFLCDAPYLPESMLKLLEDICVSQGNSQQTKDSDGDRVTQGLGTVWSLILARPPLRQDC
LDIALKCAIHSQDEVRGKAVRLVTKKLYELTYASERVEQFAIDSLLAIANKHGVETDINF
TSLKESSPEQFEAGSQETSVSGSHISDAEPSESTCNKTDLVSPKQSAVSVSEAKRHTSLF
FALCTKRPILLQHLFNVYGRSPKVVKQCIHWHIPNLVRNLGSSCSEMLAIIHNPPEGSEE
LVTLILQTLTEDSTPSAELVAAVKHLYETKLKDASILIPLLSSFPKEEVLPIFPRLVDLP
PDRFQDALARILQGSAHTGPALTPAEVLIAIHDINPEKDRVALKKVTDACTACFEQRTVF
TQQVLEKSLNKLVDNVPIPLLFMRTVIQALDAFPALVDFVMEILSRLVNKQIWKMPKLWV
GFLKLAYQTQPRSFDVILQLPPPQLEIALNKYPNLRTPLCSFVNQRNMHSILPRQILKVL
GFINEPHQAPIPFVPAAMQTADATSSLPGATLM
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgaggcggacggcgcccggtggccggagcctcgaggcgacgctgccggggcg
ccgccgctggagcgtggcgatgcgccttcccctcgcttcgattcgtctcgtgccctaaga
ttgctgagagagcttggctcaaatgtaacagaagatttggttgtgctgatgccaaatttg
ctatcatttctgaaacatgatgatcctgcggttgttaatcaatccatagctagtgggaca
aatttatttgctgctgtattggaagagatgacacttcagattaataagtgtggaagggtt
gatgcttggcttgaagagatgtgggcttggatgaagcagtttaaagatgcagtccataat
ctgatccatgagtctgtcccagttgctactaaactgtttgctgtaaagttcattgaaaca
tggatcctgtgtttcgcacctcaatccaaaagtgaccggatgcagccaactgaaggaagg
aacaggaggttgtttgatagttcaagattatctcaattccatcccagccttaaccctgct
gttctcgaagctgatgcaaacagggctctcatcctccttgtggatatactgcagtcagct
tgtgctcatcaaggatccttcctagttggcaccattaattctcttgcagcaattgcaaag
aatagacctgtttactacgaacgcatactgccagtgctacttggttttgaccctagtttg
gaggttgcaaaaagagctcatcctgcaagtctgcggtattccctgaaaacagctttttta
gggtttctaaggagtccttgccaggcaatgattgagtccaaggatactctggtaaggcag
cttcgtgttctgagccctggtgaagcaacagaacagattattaggcaagtagagaagatg
actagaaatattgagcgcgcttctcgtgctagcaaggatgaaccttcaacgttggatatg
ccttacggagatgttagtcggaaatatcctgctgccagatcaagtgatgcttttgctaca
gctgatggcgtagctaaaagagcaagatttgatacctctgctgctttaaacccaccattt
cagggagcatctgattattctaatatgcaggttgacaatgaagcgaatgtggatcattcc
tctgatccagctctcttgaattgtgatatgtctcctgttgagaagatgattgaaatgatt
ggtgctttacttgctgaaggggaaagaggagctgaatcccttggcattctcatctcaaca
gtagaagcagatgtcatggctgacattgtaatagaaacaatgaaacatctacctgaaact
tcaattctattagctaccagcaacaatggccagcaaaagaaaattcaatcttcctccagt
cccctgacagaaaacttgccagcaaactcccactcaatgccctacagtacgcagttcaca
cttcctgcagatggagtcagcatgtcaatgtcagatgtgcctgttgtgtctggcgttcat
gattctaagcgtgacccaagaagagatcctcgtcgccttgatcctcgtcggacagttgcc
cctgcagccactagttccatacatgtgaagggggaaaccaccggcgtgcatcagacaaat
aacttgtcaaatgtaccttatcctgtttcagggaaggttgaaaactctttagactattca
ggagacctatctaaaaatgaagacgtgcagcaaacatcttgtcaacccaatcaatcactc
ccaaaggaaaatagtgagattttggatgatgccttggaactggagccgaaatttgaagtg
caggcattagcagatgttggatttcattcttctgatgttgataaagagatggtcaatcca
ttgtctccagaagctacttcaaacaatgaattggatagcgtggaattggaggttgatcca
ttttccccagttttgaaggcatcaacgccggaggatactactaatcatgatttgccagtt
cttccatctcatctggaattaagtgacgatgagaaaatcttgttgcacaaattagcaatt
agacggataatcgatgattacaagaaaaacagcgttaacacaagattttccctccttgct
catttgattgcccagagtactgctgatgacaatattatggatttgattcagagacacatt
atataccattatcatgatcagggtcatgaactagcaatgcatgtgctgtatcagctgcac
agtgtgagtgttgctgattcaccagaaagcaccgcacctgcttctaaaaattatgagaac
ttctttatatcacttgcaaggtccttgattcactcgctacctgcttcagacaaatctttt
agcaaatttctgtgtgatgcaccatacttgcctgagtctatgcttaaattactggaggat
atttgtgtgtcacaaggcaacagccagcaaacaaaggacagtgatggtgatcgtgtcacc
caaggccttggaaccgtgtggagtcttatcttagcacggcctccacttcgacaagattgc
ttagatattgctcttaagtgtgccattcactctcaagatgaagtcaggggaaaggcagtt
agattggttacaaaaaaactctatgaactaacatacgcatcagaaagagttgagcagttt
gccatcgacagtcttttggcaattgctaataaacatggtgtggagacggacattaatttc
acatccttgaaagaatcttcacctgagcagtttgaggcaggcagccaggaaacttcggtt
agtggctcccatatttcagatgctgaaccttctgaaagtacatgcaataagaccgatttg
gtttcacctaagcaatctgcagtatctgtatctgaggccaaacgccatacttcattgttc
tttgcactttgcacgaagaggcccattcttcttcaacatctgttcaatgtttatggaagg
tctccaaaagttgtcaagcagtgtatccattggcatatacccaatcttgtaagaaacctg
ggatcctcatgttctgagatgctggctattattcataacccacctgaaggcagtgaagag
cttgttaccttgatattgcaaactctgacagaagattcaactccttcagccgaacttgta
gcggcagttaaacatctatatgaaaccaagctgaaggatgcatctattctcattccgttg
ttatcttcatttccaaaggaagaggtgctgcccatatttccaagactagttgatctccca
cctgatagattccaagatgcacttgctcggatattgcagggatctgctcatactggtccg
gctttaacccctgctgaagttcttatagccattcatgatattaatcctgaaaaggataga
gttgccctgaagaaggtcactgatgcttgcacagcttgctttgaacagcgcacggtattt
actcagcaagttttggagaagtcactgaataaattggttgacaatgtaccaattccactt
cttttcatgagaacagttattcaagcacttgatgctttcccagctttggttgattttgtc
atggaaatactctccaggcttgttaataagcagatatggaaaatgccaaagctgtgggtt
gggttcttaaaattggcatatcagactcagccacgctcgtttgatgttattttgcagtta
cctccaccccagcttgaaatagctttgaataagtaccccaatctacgaactcctctttgt
tcctttgttaatcagcggaacatgcacagcatcttgcccagacagattttgaaagttctg
ggcttcatcaatgaaccgcaccaggcaccaattccatttgtgcctgctgcaatgcaaacg
gcagatgcaacctcctctcttcctggtgcaactcttatgtga
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