Oryza glaberrima (African rice): 127770200
Help
Entry
127770200 CDS
T08853
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127770200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127770200
03036 Chromosome and associated proteins [BR:
ogl03036
]
127770200
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127770200
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127770200
mRNA degradation factors
5'-3' decay
Decapping complex
127770200
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127770200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127770200
NCBI-ProteinID:
XP_052151826
UniProt:
I1PNC0
LinkDB
All DBs
Position
4:23431949..23438264
Genome browser
AA seq
498 aa
AA seq
DB search
MDPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQHQHQHQQPPHPHHHQYVQRQPQPQQTP
HNSQHQQWLRRNQIAAEAAGASEQKAPPVADGIDSSSQDWKAQLKLPPQDTRYRTEDVTA
TKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCI
PALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLY
QPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQI
LMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL
FTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQEL
GTEIKPIPPQIDRAIYCQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgcgaggtaccctcccggcatcggcaacggccggggcgggaaccctaac
tactacggccgtggcccaccgccatcgcagcatcagcagcaccagcaccagcaccagcag
ccgccgcacccgcaccaccaccagtacgtgcagcggcagccgcagccgcagcaaacgccg
cacaacagccagcatcagcagtggcttcggcggaaccagatcgccgccgaggccgcgggc
gccagcgagcagaaggcgccgcctgtcgcggacggcatagattcgagttcacaagactgg
aaggcccaactgaagctcccaccgcaagatacacgctacaggacagaggatgttactgct
accaagggaaatgaatttgaagactattttctgaagcgagaactccttatggggatatat
gagaaaggatttgaaagaccttctcctatacaagaagaaagtattcctattgcattaact
ggcagtgatattcttgcaagagcaaaaaatggaactggcaagactgctgcattttgtata
cccgcgctggaaaagattgatcaagacaaaaatgctattcaagttgttatattggttccc
acaagggaattggctctacaaacatcacaagtttgcaaggagcttgggaaacatttgaag
attcaagtgatggtcactactggaggaaccagcctaaaggatgatattgtccgtctttat
caacctgttcatttacttgttggaactcctggtcgcattttagaccttacaaagaaaggt
gtctgcgtcctgaagaactgttcaatgcttgttatggatgaggcagacaagcttctttct
cctgagttccaaccgtctattcaggaattgattcggtatcttccatcgaatcggcaaatt
ttgatgttctctgcaacattccctgtgactgtcaaggagttcaaggacaaatatctccct
aaaccctatgtcattaaccttatggatgaacttacattgaagggaattacacagttttat
gcttttgttgaagagaggcagaaagtccactgtcttaatactcttttttccaagctgcaa
attaatcaatcgataatattctgtaactcggtaaatcgtgttgaactattggcgaagaag
atcacagagcttggttattcttgcttctatatccatgctaaaatgttgcaagaccatcgg
aacagggttttccatgattttcgcaatggtgcatgcaggaacttggtttgtacagatctt
tttacaaggggaatagatatccaagctgttaatgttgttatcaattttgatttccccaag
agcgcagaaacatatctccatagggttggtagatctggcagattcggccaccttggtttg
gctgtgaatttgatcacctatgaggaccgttttaacttgtatcgcattgaacaagagctt
ggaaccgagataaaacccataccacctcagattgaccgagcaatatattgccaatag
DBGET
integrated database retrieval system
