Oryza glaberrima (African rice): 127770462
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Entry
127770462 CDS
T08853
Name
(RefSeq) DNA polymerase I A, chloroplastic-like
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03030
DNA replication
ogl03410
Base excision repair
ogl03420
Nucleotide excision repair
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127770462
03410 Base excision repair
127770462
03420 Nucleotide excision repair
127770462
03440 Homologous recombination
127770462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogl03032
]
127770462
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127770462
Enzymes [BR:
ogl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
127770462
DNA replication proteins [BR:
ogl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
127770462
DNA repair and recombination proteins [BR:
ogl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
127770462
NER (nucleotide excision repair)
GGR (global genome repair) factors
127770462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
127770462
NCBI-ProteinID:
XP_052152148
LinkDB
All DBs
Position
4:28705479..28712350
Genome browser
AA seq
1032 aa
AA seq
DB search
MAAPAPAPAPAQLRRCPCSAPLWAAPSPFRCRGGRRGRSPFIGGGRQDYSHSSSGLGVTD
NSAFKIGVYTNFNVQSNAQEWVEESKRISSIKTRNNVGNTIYKGSTHLRAGILHHEPLED
HKSSNYSSLYNVRERMTPNSLANRHANMELAKHNTRNQAASAVSALTSVVNDDIKPLNRS
SGSELKTQWQPDSKIDASVLKISKVETSLQFDDKARDGYDGDEHECTAKNTVQDSPAKAP
MSKESKDARKALATVYDKVLVVDNVKSARSVVQLLTSKYKNFIHACDTEVANIDVKQETP
VSHGEVICFSIYSGNSDAEADFGNGKTCIWVDVLDGGRDVLMEFAPFFEDPSIRKVWHNY
SFDSHVIENYGIKVAGFHADTMHLARLWDSSRRMDGGYSLEGLTNDHRVMGVVPKELQKI
GKRSMKTIFGWKKIKKDGSAGKIISMEPVEVLQRDDREMWICYSSLDSMSTLRLYESLKS
KLEKKHWTFDGCPRGSMYDFYEEYWRPFGALLVKMETAGMLVDRGYLSEIEKVAVAQRKL
AADKFRKWASKYCPDAKYMNVNSDTQIRQLFFGGIENRCKPGETLPKSRTIKVPNDGSLI
AEGKKTPKYRTIELFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYTTDDVEDD
DSGDSEISEHDLNDTASYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQG
NHISCDEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVADY
GQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQEK
PPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVLA
WQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCAM
LEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELAV
DAKCAQNWYAAK
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccggccccggcgccggcgcccgcgcagctgcggcggtgcccgtgctccgcg
cctctctgggccgcgccgtcgcccttccgctgccgcggcggccgccgcggccgctcgccg
ttcatcggaggcggaaggcaggactactcgcatagtagctcgggccttggagttaccgac
aacagtgctttcaaaattggagtgtataccaacttcaatgtgcaaagtaatgcacaagaa
tgggttgaggagagcaagaggatatcctcgatcaaaaccaggaataacgtgggaaacact
atttataaaggttctactcatctacgagcaggaattcttcatcacgaacctttggaagat
cacaaaagttccaactattcttcattgtacaatgtaagagaaagaatgactcctaattct
cttgcaaataggcatgctaacatggagttggcaaagcataacacgaggaatcaagctgca
agtgctgtgtcagcactgaccagtgttgttaacgatgacattaaaccactcaacaggtct
agtggctctgaactgaagactcaatggcaaccagattctaagattgatgcttccgttctg
aagatctctaaagtcgagacaagcctgcagtttgatgacaaagctagggatggttatgat
ggagatgaacatgaatgcacagccaagaatacagtacaagattctccagctaaggcaccc
atgtccaaggagtctaaagatgcgaggaaggcacttgctactgtgtacgacaaagttctg
gtggttgacaatgtgaagtcagctaggagtgttgttcaattgcttacttcaaagtacaaa
aactttattcatgcatgtgacacagaggtagctaatattgatgttaaacaagagacacca
gttagccatggagaggtcatttgctttagcatctactctggcaactctgatgcagaagct
gattttggaaatggaaaaacatgcatttgggtggacgtgctggatggtgggcgagatgtc
ctcatggagtttgctccatttttcgaggatccctcaatcaggaaggtttggcacaactat
agttttgatagccatgtcatagagaactatggaatcaaagttgctgggtttcatgctgat
acgatgcatcttgcacgactttgggactcttcaagaagaatggatggaggatattcactt
gaaggacttacaaatgatcacagggtcatgggtgttgtaccaaaggaattacaaaagatt
ggaaagagatcaatgaaaaccatctttggttggaaaaagattaaaaaggatggatctgca
gggaaaattatctctatggagcctgtcgaagtattacaaagggatgacagagaaatgtgg
atctgttattcttcattagattcaatgagtaccttacgactttatgaaagtttgaaaagc
aagctggaaaaaaagcactggacttttgatggttgccctagaggttcaatgtatgatttc
tacgaggagtattggcgtccttttggtgcccttcttgtcaagatggaaacagctggaatg
ctagtcgaccgtggttacctttcagaaattgaaaaggttgctgttgcacagcgaaaacta
gctgcggataaatttcggaaatgggcatctaaatattgtcctgatgcaaaatacatgaac
gtgaacagtgatactcagattcgccaactgttctttggtggtatagagaatagatgcaaa
cctggtgaaactttgccaaagagtagaactattaaagtaccaaatgatggaagccttatt
gcagagggcaagaaaactccaaagtatcgtactattgaacttttcagcattgtggaagat
ctgaaaactgatctatttactgcaagtggctggccttcagtaagtggagatgcattgaga
agtttggctggtaaactgccaactgatcttgtttacacaacagatgatgtagaggatgat
gacagtggtgattcagaaatttctgagcatgatctaaacgacactgcctcttatggaact
gcatatgaagcatttggaggaggaaagaaaggaaaggaagcatgccatgccattgcggct
ctctgtgagatttgttctattgactcgttgatatccaactttattcttcccttacagggg
aatcatatatcatgtgacgaggggcggatccactgttcattaaatataaatacagaaaca
gggcgtctgtcagcaagaacaccaaatttacagaatcaacctgcactggaaaaggatcgg
tataaaatccgtcaagcttttgttgcagctccagggaactctctcatcgttgctgattat
ggtcagctggagctcaggatcttggcacatcttgctagttgtaaaagcatgttagatgct
ttcaaagctggtggtgacttccattccaggacagctatgaacatgtaccagcatatccgt
gatgctgttgaagaaaagaaagtacttcttgaatggcatcctcaacctggccaagagaaa
cctcctgtgcccttgttgaaggatgcctttggcgctgagaggcggaaagctaaaatgctt
aatttctccattgcatatggaaaaacacctgttgggcttgctcgagattggaaggtctct
gtcaaggaagcaaaggataccctgaaactctggtacagggatagaaaagaggttttagct
tggcaaatgaaacaaaaagaattagcgcaggagaagtgtgaagtttacactttgctcggg
cggtcgcgccgctttcctaacatggctcatgcaacttctggtcaaaggggtcacattgag
cgagctgctatcaatgcaccagtacagggcagcgcagcagatgttgctatgtgtgctatg
ctcgagatagatcggaatgctcgtcttaaggaactcggttggaggcttctcttgcaggtg
cacgatgaagtgatactggaagggcctacggaatctgccgatctggccaagtcgattgtg
gttgaatgcatgtccaagcccttctacggcaccaacatcttgaatgttgaactggctgtt
gatgccaagtgtgcgcagaattggtatgcagccaagtag
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