Oryza glaberrima (African rice): 127770547
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Entry
127770547 CDS
T08853
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogl01009
]
127770547
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127770547
Enzymes [BR:
ogl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
127770547
Protein phosphatases and associated proteins [BR:
ogl01009
]
HAD phosphatases
Fcp/Scp phosphatases
127770547
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
127770547
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPOC_CPL1_2
dsrm
NIF
Motif
Other DBs
NCBI-GeneID:
127770547
NCBI-ProteinID:
XP_052152266
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All DBs
Position
4:23285201..23296404
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AA seq
945 aa
AA seq
DB search
MVMMMIKSVVYYGSTSIGHVEVWPKGGTDLAVAAWAREIRVDHLSPPSERCPTLAVLHAV
AAGGRCLVMESRPTAIADEPPPPLVAMHAACLRDGKTAVFPLGAEEIHLVAMTSKRNLPN
LACFWGYKVPSGLYNSCLSMLNLRCLGIVFDLDETLLVANTTRSFEDRIDALQRKLSNEI
DPQHISGMSAEIKRYQEDKSILKQYIENDQVIDGGKVYKVQTEVIPPLPDNHQPMTRPII
RLQEKNIILTRINPLIRDTSVLVRLRPAWEDLRSYLIARGRKRFEVYVCTMAERDYALEM
WRLLDPDSRLINSVQLTDRLVCVKSGSRKSLLNVFHDGSCHPEMALVIDDRLKVWDEKDQ
CRVHVVPAFSPYYSPQAEANFSVPVLCFARNVACNVRGGFFKEFDEVLLPRISEIHYEDE
INDFPSAPDVGNYLITEDENAAILNVNKDPLAFDGMADAEVERRLKEVSCSVQAVNPIPT
NADVMPVAPNQQLITSSVPEAPSLGMIPLNNDQGPQPPSSWPVAQSAPVDPSQSSPAREE
GEVPESELDPDTRRRLLILQHGQDTRDPAPPCPAGSPVQTSVLPVQSHGNWSHVEDEMNP
RSLNRTSTGFHLESDDINYDKKQPHNPPYFPDEDNLITSDRYNRRIHRYPSQLPHSEDHH
MLNRSSIAYRSFPGEDMGNRFGPSNHRSSKIEPGHQFVQNAETSAGVLEEIAVECGFKVE
YQSTLCSTAELQFSIEVRILGEKVGEGIGKTRKAAKRQAVNMSLRNLAEKFLTSDPDKMM
ILKENGFSSNSNSFRYSGGSRDDTSPVASTSNESRYMGERVDTLRKPAGSVAALKELCTV
EGYNLVFQEQPSRPRGSSGKEAYAQVEIGGQILGKGVGATWEQAKLQAADEALGNLKSML
GIFAHKSSGFQRSSVSNFNRFKPDFQRSLQTIPSGWDSRNNGRVL
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgatgatgatcaaatccgtggtttattacgggagcacctccattgggcatgtg
gaggtgtggcccaagggcgggacggacctggcggtggcggcgtgggcgcgggagatccgg
gtggaccacctgtcgccgcccagcgagcggtgcccgacgctcgccgtgctgcacgccgtt
gccgcgggcggtcgctgcctcgtgatggagtccaggcccacggccatcgcggatgagccc
ccgccgccgctcgtcgccatgcacgccgcttgcctcagggacggaaagacagctgttttt
cctctaggagcagaagagatccatttagtggcaatgacttccaagagaaacttgccgaat
cttgcttgtttttggggctataaggtgccatcgggcttgtataattcttgcttgagcatg
ttgaatcttcgttgccttggtattgtgtttgaccttgatgaaacattgcttgtcgccaat
accacacggtcctttgaagacagaattgatgcacttcagagaaagttgagtaacgagatt
gatcctcagcatattagtggtatgtcggcagagatcaagaggtaccaagaagacaagtct
atcctaaagcagtatatagaaaatgatcaggttattgatggtggcaaggtttataaagta
cagactgaggttatcccacctttacctgataatcatcagcctatgacacgtccaatcata
agattacaagagaaaaatattatcctgacgcgtataaatccattgataagagataccagt
gttctggtacggttgaggcctgcatgggaggatcttcggagctacttaattgcaagaggt
cgcaaacgttttgaggtatatgtgtgcacaatggctgagagggactatgctttggaaatg
tggaggttgctcgatccagattcaagattgataaactctgttcaacttactgacagactt
gtctgtgttaaatctggctctcgaaagtctctgctgaatgtattccatgatgggtcttgc
cacccagaaatggccctagtgattgatgatcgcttgaaagtttgggatgagaaagaccag
tgtagggttcacgttgttcctgccttttctccatattactctccccaggcagaggcaaac
ttctctgttccagttctctgctttgctagaaatgttgcatgcaatgtcaggggtggtttt
ttcaaagaatttgatgaggtccttctgccacggataagcgagattcactacgaggacgaa
ataaatgattttccgtccgctcctgatgttggcaattatttgattaccgaggacgagaat
gctgccattttgaatgtaaacaaagatcctcttgcttttgatggtatggcagatgcagaa
gttgagaggagattgaaggaagtgtcttgcagtgttcaagctgtgaatccaataccaact
aatgctgatgtgatgcctgtggcccctaaccagcaacttattacatcatctgttccagaa
gcaccatcattgggcatgattcctttgaataatgatcaaggtcctcagcctccttcaagc
tggccggttgctcaatctgctcctgtggatccatctcaaagttctccagctagagaagag
ggtgaggttcctgaatctgagttggatccggacacaaggagaaggcttctcatattacag
catggtcaagacacgagagatcctgcaccaccctgtcctgcaggatcacccgtacagacc
tcagtattgccagtgcaatctcatgggaattggtcacatgtagaggatgagatgaatcca
agaagcctaaataggacctcaacagggttccatttagaatctgatgatataaattatgat
aaaaagcaaccacataatccaccgtattttcctgatgaggataatcttataacttctgat
agatataaccgtcggatccatagatacccctcacagctgcctcacagtgaggatcatcat
atgctgaatcgttcatctatagcctacagatcttttcctggagaggacatgggaaaccga
tttggtccttcaaatcatagaagcagtaaaatagaaccaggacaccagtttgtacaaaac
gcagagacctcagctggtgtgttggaggaaattgcagtggaatgtgggtttaaggtggag
taccaatcaactttgtgtagtactgcagagttgcaattctccattgaggttaggatttta
ggagaaaaggtaggtgaaggaattggaaaaacaagaaaagcagcaaaacgccaagctgtt
aatatgtccttaagaaatctggcagaaaaatttctaacgtctgatccggataagatgatg
attctgaaggagaatggttttagtagtaattcaaactcattcagatattcgggaggtagt
agagatgacacatcaccagttgcaagcacttcaaacgagtctagatacatgggcgagaga
gttgatactttaagaaaacctgctggttctgttgctgctctcaaagagctttgtacggtt
gagggttacaacttagttttccaagagcagccatcacgtcctcgtggttcatcaggtaaa
gaagcttatgctcaggtcgaaataggtggtcaaatcctgggaaaaggagttggagcaaca
tgggaacaagctaagctgcaggctgctgatgaggctctaggaaatttgaaatccatgctt
ggtatctttgcacataaatcgtctggatttcaaaggtcatcggtatcaaattttaaccgc
ttcaaaccagatttccagcggagtctacaaaccataccttctggttgggactctaggaac
aatggtcgtgttctttga
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