Oryza glaberrima (African rice): 127771187
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Entry
127771187 CDS
T08853
Name
(RefSeq) pachytene checkpoint protein 2 homolog isoform X1
KO
K22399
pachytene checkpoint protein 2
Organism
ogl
Oryza glaberrima (African rice)
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogl03036
]
127771187
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Others
127771187
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_lid_TRIP13_C
TRIP13_N
AAA
AAA_22
AAA_16
AAA_18
nSTAND3
AAA_14
Cytidylate_kin
NPHP3_N
AAA_5
Viral_helicase1
NACHT
AAA_30
AAA_28
RuvB_N
AAA_2
RNA_helicase
ATPase_2
TsaE
TIP49
DUF815
nSTAND1
AAA_17
ABC_tran
AAA_11
AAA_24
AAA_33
AAA_7
bpMoxR
Rad17
nSTAND6
IstB_IS21
AAA_19
AAA_3
PduV-EutP
SLFN-g3_helicase
NB-ARC
Cytidylate_kin2
KAP_NTPase
SRPRB
Sigma54_activat
DnaB_C
Mg_chelatase
AAA_RNF213_4
SKI
NTPase_1
ResIII
Motif
Other DBs
NCBI-GeneID:
127771187
NCBI-ProteinID:
XP_052152991
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Position
4:20907785..20912329
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AA seq
490 aa
AA seq
DB search
MSAPMEVSFSAPPPPDAASAAAAAAAAPSLVPAVAAAAAATTVSCSPQPPTGSPSADDRI
LVSVEVLLHATSTARAEDVCAAVERMLEARSLSYVDGPVPIPNDDPFLLANVKRIQICDT
DEWTENHKVLLFWQVRPVVHVFQLSEDGPGEEPGEDDTLSSFNEWALPAKEFDGLWESLL
YEVGLKQRLLRYAASALLFTEKGVDPCLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRF
KSRYSMCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAA
RQAAISGSEPSDSIRVVNALLTQMDKLKSWPNVIILTTSNITTAIGIKFCLLYLYEFADI
AFVDRADIKAYVGPPTLQARYEILRSCLQELLRVGILTHTQGGNSLCLLSYFSLMENQHC
PEVADPHGSVHLSGLLHKAAEICEGLSGRTLRKLPFLAHASVANPSCCDASAFLHALIQT
AQRELSESRG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccccatggaggtctccttctccgcgccgcctcctccggatgcggcatctgct
gccgccgccgccgccgcggccccatcgctggtgcccgccgtggcggcggcggcggcggcg
accaccgtttcctgctcgccgcagccaccgacggggtcgccctcggccgacgacaggatc
ctcgtttcagttgaggtgcttctgcacgccactagcacagctcgagccgaggacgtctgc
gcggcggtggagaggatgttagaagctcgaagcttaagctatgttgatggtcctgtcccg
attcctaatgatgatccttttcttcttgcaaatgttaaaaggatccaaatctgcgacact
gatgagtggactgagaatcacaaagttctgttattttggcaagtcaggcctgttgttcat
gtgttccagttgagcgaagatggtcctggtgaggagccgggtgaggacgatacactctct
agcttcaatgagtgggctctgcctgccaaagaatttgatgggttgtgggaaagcttactg
tatgaagttggtctcaagcagaggttgctgagatatgctgctagtgctttgctgtttact
gaaaagggtgtagacccatgtcttgtttcctggaacaggattgtacttttgcatggtcca
cccggaacaggaaagacttccttgtgtaaagcacttgctcaaaaactttccattcgcttc
aagtcaaggtattccatgtgtcaattgattgaagtcaatgcccattcactgttcagcaag
tggttttctgaaagcggaaaactggtggccaaacttttccagaagatccaggagatggtg
gaagaagaaagcaacctggtatttgtattgatagatgaagttgaaagcctagctgctgcc
agacaggctgccatatctggatctgaaccttcagattccataagggttgtaaatgcatta
cttacacaaatggacaaactcaagtcttggccaaatgttatcattttgacaacatcaaat
atcaccacagctattggtatcaagttctgccttttatacctttatgaatttgcagatatt
gcatttgttgatagagcagacatcaaggcatacgttggacccccaacccttcaagcacga
tacgaaattttgaggtcatgcttacaggaacttttgcgagttggaattcttacacatact
cagggtggcaattctctttgccttttgagttattttagcctgatggagaaccagcactgt
cctgaggtcgcagatcctcatggttcggttcatctctctggcctactccataaagctgca
gaaatatgtgagggattaagcggtcgaacattgaggaaacttcctttcctggcacatgct
tctgttgctaacccttcatgctgcgatgcctctgctttcctgcacgctttgatacagact
gctcaaagagagctctccgagtcgcgtggttga
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