Oryza glaberrima (African rice): 127771645
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Entry
127771645 CDS
T08853
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127771645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127771645
03036 Chromosome and associated proteins [BR:
ogl03036
]
127771645
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127771645
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127771645
PBAF complex
127771645
GBAF(ncBAF) complex
127771645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
TraG-D_C
Motif
Other DBs
NCBI-GeneID:
127771645
NCBI-ProteinID:
XP_052153531
LinkDB
All DBs
Position
4:695600..702119
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AA seq
885 aa
AA seq
DB search
MEPKPSPPPAATTATATYRRRGKPKPKTKRKAAKPPSPSPPPKRQQARDDPPPPTPHSPL
NPAPEDAPPQLDAGERDPPPHARVKAAKLPPVSEEVQAVLSRGAGVHVVPSFAGWFSWKE
IHQIEKQALPSFFDGKSLRRTPEIYLGIRNFIMKKFHSNPQMHLELKDLTELSDGEMDAQ
LKVLEFLSHWGLINFHPFPPAVQGMSELFESITNADTEEKISVVEKLFQFETVQSYLIPA
PNQAELTAPIHTQSLLSEPTLAEDSITQAESSVEYHCNSCSVDCSRKRYHCRTQADFDLC
CDCYDKGNLDAGMSQTDFIIMESAEIPGFGGTSWTDQETLLLLEALEIFQAKWGDIAEHV
ATKTKAQCMLHFLQMPIMDLFLHDGDVNETSQETAEQVSAELGTSHVTEKKEVEDKAEEI
KTNDRKTVAKPKLNLTETEVNLDDNAANNDTKSSGDINVDVCSNTGVSNRSSDTEPTKKE
TSGENTSNIVNDALKYAFEAVGHIPKIEELGSFTEAGNPVMALAAFLSGLVDHDDVTTLC
CSSLKAISDMSPALQLATMHCFILQDPPNDLKDPPVSISFANTDGGQQKDKDATSNPSVT
DKDDNLKEESALSVEEPNTTSPSSKNTRKLSNAKESKDESPQMEPKPSSANDCDNPISQV
AKRASDNIRGHSSTSLPVSLNNTNEPCFISSQEASAGNTKDTSHTERIEGDEPIYEDPPL
QGKVESNKIEHEVTDLSTVQQHESIQTSLKKGHIQDHNSIKKIVADDVSIQRLQRAAASA
ISAAAVKAKLLAKHEEYQIQRLAALVIDKQLHKMQAKMSVFTEVDNLALRAREHTERTRK
KLLMERSAIIASRMAALPPRPNHQPGMPGSRLPVGYGVNQHLRRS
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaaaccctcgccgccgcccgccgccaccaccgccaccgccacctaccgccgc
cgcggcaagcccaagcccaagaccaagcgcaaggcagccaagcccccctcgccgtccccg
ccacccaagcgccagcaggccagggacgacccccctcccccgaccccgcactcgccgctc
aaccctgcgccggaggatgcgccgccccagctcgacgccggggagcgcgacccgcctccg
cacgcccgggtaaaggcggcaaagctgccgccggtgagcgaggaagtccaggccgtcctt
tcgcgcggagccggtgtccacgtcgtcccctccttcgcaggatggttttcatggaaggaa
atccaccaaattgaaaagcaagcattgccttcattttttgatgggaaatctttacggagg
acacctgagatatatttgggaattagaaattttattatgaagaagtttcattctaatcct
caaatgcatttggagttgaaggatttgactgagttgtcagatggggagatggatgctcag
ttgaaagtcttggagttcttgtcacactggggtttgatcaatttccacccttttccacca
gctgtacaggggatgagtgagctgtttgagagcataacaaatgctgatacagaggagaaa
atttctgtagtggaaaaattatttcagtttgaaacagtgcagtcatatctcattcctgct
cctaaccaagcagagctgacagctccgattcacacccagagcttgctttctgagcctact
ctagctgaagattcgattacccaagctgagtcttctgttgagtaccactgcaactcttgc
tcagttgattgctcgaggaagcgctaccattgcagaactcaggcagactttgacttgtgt
tgtgactgctatgacaaaggaaatttggatgcaggcatgtcacaaactgatttcatcatt
atggaatctgcagaaattccaggctttggtggtactagctggactgaccaggagaccttg
cttcttttggaagctttagaaattttccaagcaaaatggggtgacattgccgagcatgtt
gctacaaaaaccaaagcacagtgcatgctacacttccttcaaatgccaattatggactta
tttctgcatgacggagatgttaatgaaacatctcaggaaactgcagagcaggtctcagca
gaactaggtacttctcatgtaactgagaaaaaggaagtagaagacaaagcagaagaaata
aaaactaatgatagaaaaactgttgcaaaaccaaaactgaacttgacagaaacagaagta
aacctagacgacaatgctgcaaataatgataccaagagttcaggtgatatcaatgtggat
gtatgtagcaacactggtgtatcaaatagatcttcagataccgaacctacaaagaaggaa
acttctggggagaacacatcaaacattgttaatgacgccctgaaatatgcttttgaggct
gttggtcacattccaaagatagaggaattgggttcatttactgaagcaggaaatcctgtc
atggcactggcggcatttctatctggccttgtggatcatgacgatgttactacgttgtgc
tgtagttcactgaaagctatatctgatatgtctcctgctcttcaactggcaacaatgcat
tgttttattcttcaggatccaccaaatgacctcaaagatccaccggtcagtataagcttt
gcaaacacagatggtgggcaacaaaaagacaaggatgctacttcaaatccaagtgttact
gacaaggatgacaatttaaaagaagagtctgctttatctgtggaagagccaaatactaca
tccccatcatcaaaaaacaccaggaaattatctaatgcaaaggaatctaaggatgaatct
ccccaaatggagcccaaacccagtagtgctaacgattgtgacaatccaatttctcaggtg
gcaaagagggcatctgataatataagaggacacagttccacttcgcttcctgtcagtctg
aataatacaaatgaaccttgtttcatatcttcccaagaggctagtgcaggaaacacaaag
gacacaagtcatacggaacgcatagaaggggatgaaccaatttatgaggatccaccatta
caaggaaaggtagagtcgaacaagattgaacatgaagtcactgacttatctactgtacag
caacatgagtccatccaaacaagtttgaaaaagggccacatacaagatcataacagtatt
aagaaaatagttgccgatgatgtctccatacaaaggctacagcgggcagcagccagtgct
atttcagcagctgctgtgaaggcaaaactccttgcgaagcatgaggaatatcaaatccag
cgactagctgcacttgtgattgataagcagctccacaagatgcaagcgaaaatgtcagtt
ttcactgaagtagataatttggccctgcgagcaagagaacacaccgagagaacccggaag
aagcttctgatggagaggagcgcgataatcgcatctcggatggcggcattgccacccaga
ccaaaccaccaacctgggatgcctgggagcagattgccagtagggtatggtgtgaatcag
catctgaggcgatcttga
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