Oryza glaberrima (African rice): 127772118
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Entry
127772118 CDS
T08853
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127772118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127772118
03036 Chromosome and associated proteins [BR:
ogl03036
]
127772118
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127772118
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127772118
PBAF complex
127772118
GBAF(ncBAF) complex
127772118
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
YEATS
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
127772118
NCBI-ProteinID:
XP_052154064
LinkDB
All DBs
Position
4:15896905..15899242
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AA seq
548 aa
AA seq
DB search
MATGGNPNPNSTPTPQPRPPQPQQQGGSPATPLGHLRPPSLAGSPFQGLFHTPPQHNPAF
QIHMGAAASPQNPLMAAAAAAAAAASAKRPPQKPPARPPAPGSSSSGGGAAAAAAAAASA
AAAYKAAAAAAAVGANSAGGVDLTPAAARRNKKRKLPEKQLPDRVAALLPESALYTQLLE
FESRVDAALHRKKVDIQEALKSPPALQRTLRIYVFNTFANQAPRTIPPPKNAEPPTWSLK
IIGRVLEDGAELDPASVVPKHNPVYPKFSSFFKRVTIALDPSLYPENPLIIWENARSAAP
QEGFEVKRKGDKEFSANIRLEMNYNPEKFKLSQPLMEVLGVEVDTRSRVIAALWQYIKAK
KLQNPTDPSFFMCDPQLKKVFGEDKLRFAMLSQKISQHLSPPPPINLEHKIKLSGNGAHA
SACYDVIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQ
SPVEFINALIASQSKDLKLIAGEANRNIERERRADFYNQPWVEDAVIRYLNRKPASGNEG
PGGGAGGS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggccaccggcggcaaccccaacccgaactccacgccgacccctcagccgcgcccgccc
cagccgcagcagcagggcggctccccggcgaccccgctcggccacctccgcccgccttcc
ctcgcgggctcccccttccagggcctcttccacaccccgccccagcacaacccggccttc
cagatccacatgggcgccgccgcctcgccgcagaacccgcttatggccgccgccgccgcc
gccgccgccgcggcctccgccaagcgccctccccagaagccccccgcgcggccccccgcc
ccgggatcctcctcctccgggggcggcgccgccgccgccgccgcggcggccgcgtccgcg
gccgcggcgtacaaggccgctgccgccgcggctgccgtgggggcgaactccgccggcggc
gtcgacctcaccccggccgccgcgcggcgcaacaagaagcggaagctccccgagaagcag
ctccccgaccgcgtcgccgcgctgctcccggagtcggcgctgtacacgcagctgctcgag
ttcgagtcccgcgtcgacgccgcgctgcaccgcaagaaggtggacatccaggaggcgctc
aagtcaccccccgcgctgcagcgcacgctccgcatctacgtgttcaacaccttcgccaac
caggcgccgcgcaccatcccgccgcccaagaacgccgagccgcccacctggtcgctcaag
atcatcggccgcgtgctcgaggacggcgccgagctggaccccgccagcgtcgtgcccaag
cacaaccctgtgtaccccaagttctcgtccttcttcaagagggtgacgatcgccctcgac
ccgtcgctgtacccggagaacccgctgatcatttgggagaatgcgcggtcggccgcccca
caggaagggttcgaggtgaagaggaaaggggataaggagttctccgcgaatatccggctg
gagatgaactataaccctgagaagttcaagctctcgcagcctctgatggaggtgctcggg
gttgaggtggacactcgttcgagggtgattgctgccctctggcagtacatcaaagcgaag
aagctgcagaatccaaccgatccttcgttctttatgtgtgatccacagttgaagaaggtc
tttggggaggataagctgaggtttgcgatgctatcgcagaagatatcacagcatctctct
cctccgccgcccatcaacttggagcataagattaagctctctgggaatggcgcgcatgcg
agtgcttgctatgatgtgattgtggatgttcctttccctctgcagaaggagatgtctgca
tttctcgccaacactgagaagcacaaggacattgaggcatgtgatgaggtgatatctgct
tcgatcaagaagatccatgagcaccgcaggaggagggcattcttccttggtttcagccag
tccccagtggagttcatcaatgcactgatagcgtctcagagtaaagatttgaagctgatc
gcaggagaagcaaataggaatattgaaagagaaagacgtgcagacttctataatcaacca
tgggttgaggatgctgtcataagatacctgaaccgcaaaccggctagcggtaacgagggc
ccaggcggtggtgctggtggttcatga
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