Oryza glaberrima (African rice): 127772285
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Entry
127772285 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127772285 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127772285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127772285
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127772285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
127772285
NCBI-ProteinID:
XP_052154270
UniProt:
I1PQY1
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Position
4:complement(30697671..30702843)
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AA seq
682 aa
AA seq
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MFIPELDNRSDPQEPSRNPGIWQCTICEHGNDAKKISCEQCGVLRYFSLYFNNALEVDGR
AKRRDKHYAVSVLARTLFSPSSAKSKDVVLSGGFKASRNATGSTRATLDALHKTYMTRKE
RHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKDTTADS
NLPVKSNEFGESSESVSVGSQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEP
WMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHKYEKEAKEKGKGSF
AYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAIL
VIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQL
GAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVS
KPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLA
RAGDNVAIGLQGIDPSHVMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHI
HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGR
VFLRSQGNTIAVGIVSRVREQA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtttattcctgaattagataaccggtctgatcctcaggagccatcaagaaatcctggc
atttggcaatgcaccatttgcgaacacggaaatgatgcaaaaaaaatatcatgtgagcaa
tgcggtgttcttcgatatttctcgctgtatttcaataatgcccttgaagttgatggcaga
gctaaacggagagacaagcattatgcggtatctgtactggcaagaactcttttctcacca
tccagtgccaagtcaaaagacgttgttctttctggtggctttaaagctagcagaaatgca
acaggaagtacacgagctacgttggatgcgctgcataagacatacatgacccgtaaagaa
cgccacattaacatagtgcctttcaagtttgatacaccatctccggatgacgtggtcgct
acaggactaaaatcgtcgagaagttttagaaaagttgacacagatgctccccatgtcact
gaaaagagggtgatggataatgatagttctacacctgagaaggatacaactgcagactca
aatttgcctgtaaagtcgaatgaattcggtgaaagtagtgagagtgtttctgttggtagt
caaaatgaaacactttgcttggaccatgagctacagcatttgagtttggagaggaagtca
caaaaaagtaaagccaatattaaaaagccagtttcttcatccctgtacaagccagaacca
tggatgctccagcatgaagatgaaggcatccctagacaattaaatcttgctattgttggc
catgtcgattctgggaaatcaactctatgtggtcgtttgttacatgccctggggaggatt
tcaaaaaagcaaatgcataaatatgagaaggaagctaaagaaaaggggaaaggatcattt
gcatatgcttgggcaatggatgagagtgctgatgaaagggagcgtggcattacaatgact
gtcggtgttgcatactttgacaccaaaaattaccatgttgttttgctggactcccctggc
cacaaagattttgttcctaatatgatatctggagcaacacaatctgatgcagctatccta
gttattgacgcttctataggatcatttgaagcaggtatgggcatcaatgggattggacag
acaaaggagcactcgcagcttgttagaagctttggcgtggataacttgatagttgttgtt
aacaagatggactcggtggaatattcaaaagagcgatttaattttatcaaatcacagctt
ggtgcttttctgcggtcatgcggttacaaagactcagcagttgcctgggttccaattagt
gcaatggagaatgagaacttaatgacaacagcttcagatactcgactatcatcatggtat
gatggaaattgcctgttgaaagccattgacacattaccgcctccttctcgtgatgtttca
aagccactgcgccttccaatttgtgatgtcttttcgtcacataagctggggcaagttgca
attggtggtaaagtagaggttggagcaacccgaagtggttctaagatcctcgtcatgcct
tttggggagttagctgtggtgaaaactattgagcggaattcctctagttgcaatttagca
agagctggggacaatgtcgctattggtttgcaagggattgaccctagtcatgtcatgcct
ggcggagtcatatgccatccagattaccctgtgtccgtggcttcttgcttggagctaaaa
attttggtcctagatatcactgtaccaatactggttggcttgcagtttgagctccacatc
catcatgcgaaggtgtctgcaagcatggtgaaaatactgtcattgctggagcagaagacc
ggcaaagcctcaaagaagatacctcgatttctcacctcgagacagactgctgtaatcgag
gtgaagctggagaaagaggtatgcgtggaagaattctcaaacctgaaagcgctaggccga
gtgttcctacgatctcagggaaacaccatcgcggttggcattgtgagccgagtacgagag
caggcttag
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