Oryza glaberrima (African rice): 127772293
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Entry
127772293 CDS
T08853
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127772293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogl03021
]
127772293
03036 Chromosome and associated proteins [BR:
ogl03036
]
127772293
Transcription machinery [BR:
ogl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127772293
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127772293
PBAF complex
127772293
GBAF(ncBAF) complex
127772293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
127772293
NCBI-ProteinID:
XP_052154280
LinkDB
All DBs
Position
4:20960152..20967805
Genome browser
AA seq
781 aa
AA seq
DB search
MSPPVAGAASSGDGPPGRPPRELYTIPASSGWFQWDEIHETERRALPEFFGGAGGSGFGT
ASRNPRIYREYRDYIISRYREDTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSA
SPSRPEAQQQQRQTEAEAVVEAPVGLQVTPRPPPSYFAEEKGGGGNENGFRLPPLTSYSD
VFGEWAPGMAPICGLCGMECRDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERID
NHSSSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECVARLIQLPFGEHMLGTVNG
KLDNRLHKIQTTDGKVNKSTVKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFS
SIDTTVSLMEQLAHLTTSTSPDVVAAAADAAIKALGNENPQARRAFQLSEKEYQTRAFSS
NHARQSDDVGGGDRDVEMHGHPDKKQGKMFISTTYQVRAAVATSIGVAAARAKMLADQEE
REMELLMASIIETQLKKIQYKIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFET
GVPISRDEVLIKLFQNKATGHELPEREKEAYGRSRACRLALIDQAVARKKPPLNAFKPHP
EHKSKLICNITGDIINKSEEHIWKHINGKRFLNKLEKLEEKMASGEMAEGEAEQSNEGEN
KTKSRKKKDKKKAAVVNPSLPREPKPEIDDSDNSDDPDFWVPPVGSRWDDDDGKDRWTSS
PVKDKDDAAEDEDGDDDGDDMADKDDEETREIASSRTKRLSVEAVGPSSFASRKKKTKKE
Q
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggtggccggcgccgcctcctccggcgacgggccgccggggcgcccgccg
cgcgagctctacaccatccctgcctcctcgggttggttccagtgggatgagatccacgag
acggagcggcgggcgctgccggagttcttcggcggcgccggggggagcgggttcgggacg
gcgtcgcggaacccgcggatctacagggagtaccgcgactacatcatcagcaggtaccgc
gaggacacctcccgccgcctcaccttcaccgaggtccgcaaggcgctcgtcggcgacgtc
acgctcctccggaagctcttcgccttcctcgactcctcgggcctcatcaacttctccgcc
tccccctcccgccccgaggcgcagcagcagcagcggcagacggaggcggaggccgtcgtg
gaggcgcccgtggggctgcaggtgacgccacggccgccgccgtcgtacttcgcggaggag
aagggaggagggggcaacgagaacggattccgtttgccgccgctgacctcgtatagtgat
gtatttggagagtgggcgcctgggatggcgcctatatgtgggctctgtggcatggagtgc
agagacgggaatgcccaaatattgaaggatggttttaaagtatgctcaaaatgttatgcc
aataatgataataagggtgaagcaaatatacatccaggtgacaaaaaggagcggatcgac
aatcattcttctagtgcatggacagatgcagaaactctccttctcttggaaggtgtacta
aaacatggagatgactgggatctcatcgcccagcatgtccgcacaaagaataaatcagaa
tgcgttgcaaggctaattcagttgccttttggtgaacatatgctgggcacagtaaatggt
aaattggataacagactccataaaatccaaacaaccgatggaaaagtgaacaagtccact
gtgaaggagtcttcaagtcaaccaactgaaacagttgatgacatgcagattgatggaaat
gaagatggcgctgataaatctgttgaagaacatcctacaaaacatagacggttgttttct
tcaatagataccactgtctcattaatggagcagttagcgcatcttaccacatcgacaagc
ccagatgttgttgctgcagctgctgatgccgcaattaaagcactgggtaatgaaaacccc
caagcaaggagagcttttcaactcagtgagaaagagtaccaaaccagggcattctcttct
aaccatgcccggcagagtgatgatgttggtggtggtgatcgggatgtagaaatgcacggg
cacccagataaaaagcagggaaagatgtttatttctaccacatatcaagtaagggcagct
gttgctacgtccataggtgtagctgctgcccgtgctaaaatgcttgcagaccaggaagaa
cgggaaatggagctcctaatggcgtccataatagaaactcagctaaaaaagatccaatac
aagatcaaacactttgaggagctagagttgatcatggatcaggaatacgctactctacag
caaatgaagtcttcccttgtcgatgaatggcaaaaggtcctcaagcgagcatttgagact
ggagtaccaatatcgagggatgaagtgcttataaagttgttccaaaacaaagcaacgggg
cacgagctgccggagcgggagaaggaggcgtacgggcggtcccgcgcgtgcaggctcgcg
ctcatcgaccaagccgtcgcgcgcaagaagccgccgctcaacgccttcaagcctcacccc
gagcacaagtcgaagcttatatgcaatattactggggacattataaacaagtcggaggaa
cacatctggaagcacatcaatgggaagaggttcctcaacaaactagaaaaactagaagaa
aagatggcatcaggtgaaatggctgaaggtgaagctgaacagtcaaatgaaggggaaaat
aaaaccaagtcaaggaagaagaaggacaagaagaaagctgctgttgttaacccttctttg
ccacgagaacctaaaccagagattgatgattcagataattctgatgatccagatttctgg
gtgcctcctgttggaagtcgttgggatgatgatgatggaaaagaccgatggacctcctct
ccagtgaaggataaggatgatgcagcagaggatgaagatggtgatgacgatggtgatgac
atggctgacaaggatgacgaggagacaagagaaattgcttcaagcaggacaaagcgactg
tcagtagaagcagttggcccaagtagcttcgcttcaaggaagaaaaaaaccaaaaaggag
cagtaa
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