Oryza glaberrima (African rice): 127772313
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Entry
127772313 CDS
T08853
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127772313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127772313
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127772313
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
127772313
NCBI-ProteinID:
XP_052154301
UniProt:
I1PR19
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Position
4:complement(30925454..30929274)
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AA seq
202 aa
AA seq
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MVSSSSPVVNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQE
HNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAV
WWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQR
YGPVISTIPQQLSRFQFNMVSS
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggtgagctcttcgtcgccggtggtgaacgtgtacccgctcgccaactacacgttcggc
accaaggagcccaagatggagaaggacacctccgtcgccgaccgcctcgcccgcatgaag
gtcaactacatgaaagaaggaatgcggaccagtgttgaagcaatcctattggtgcaagaa
cacaaccatccccacatactgctgttgcaaattggtaatacattttgcaagcttcctggt
ggacgtttgaagcctggagaaaatgaaattgagggtctgaaaagaaagttatgcagtaag
cttgcagtgaactcgccttcctttccacctaactggcaggttggagagtgtgttgctgta
tggtggaggccaaactttgagactgtgatgtatccttactgccctccacatataaccaag
cccaaggagtgcaagaagcttttcattgttcacctatctgaaagagagtattttgctgtt
ccgaggaacctgaagctgcttgctgttccactgtttgaactctatgacaacgttcagcga
tatgggccagtcatttccaccattccgcagcagctgtctaggttccagttcaacatggtt
agctcgtga
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