Oryza glaberrima (African rice): 127772353
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Entry
127772353 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127772353 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127772353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127772353
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127772353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
PBP1_TM
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
127772353
NCBI-ProteinID:
XP_052154344
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Position
4:complement(26497132..26501774)
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AA seq
680 aa
AA seq
DB search
MPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESSKKSSSTVPVLW
RCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDCTKMPVN
TRTTDFDGDPEIKNASIPHEKVGSTQYTSAGSSSGAGKKVKHIALPEDVPVERTAQLISD
HFQLKEDQSSRASSSAQNEDVAQKLSSDIQKLGLEKNEVDTAKPYLPEEYKPEKWMFANE
ESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAM
DESSEERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACT
GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSF
LRSCNFKDSSVTWIPLSAVENQNLIKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPL
ILPICDVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAG
DNVAVSLQGIDGSKLIPGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHV
KEAARVTKIVALLDKAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLR
SSGSTIAVGVVTRVLRQDQN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcaaggttgtctctgggcctgactacgatgacgagtacgacgatgactatgac
gagtatgatgaggactacgatgattacggtgagaccggccacagtgacgacattcagcac
cccgtgaaggaggagaaagagtcatcgaagaagtcctcaagtacggtgcctgtgctttgg
agatgctccatgtgcatgttcgataatcatgaaagcatggtgtattgtgagatgtgtggg
gtttttcgagaatcctttatgaaatctgccaaggatggttcaataaaagtccatgggata
ccaagtgattttgggacaccttcgatgccgaaatctgactgtaccaagatgccagtgaat
actcgtactacagactttgatggtgaccctgagataaagaatgctagcatacctcatgag
aaagttggttccacgcagtacacatctgctggtagctcatcaggcgctgggaaaaaggtg
aaacacattgcacttcctgaagatgtgcctgtcgagaggacagctcaattgatttctgat
cattttcagctgaaggaggaccagagtagtagggctagcagttctgcgcagaatgaggat
gtggcccagaaactttcttctgacatacagaagctaggtttagaaaagaatgaagtagat
actgcaaaaccttatttacctgaagaatataagcctgagaagtggatgttcgctaatgag
gaatcaggagtgctgagccaactaaaccttgcaatagtaggtcatgttgattctggcaag
tcaacactctctgggagactgctacatctgttaggaaggatatcgaaaaaagatatgcac
aagaatgagaaggaggctaaagaaaaaggaaaaggatcatttgcttatgcgtgggctatg
gatgaaagcagtgaagaaagagaaagaggcgtgacaatgactgtggccgtggcttatttg
gagactaagaagtaccgtgtagttttgcttgactctccaggccataaagattttgtacca
aatatgatatctggcgcaacgcaagctgatgcagctattcttgttgttgatgcttgcact
ggttcatttgaagctggcatggacggtgaaggagggaaaagtgttggccagacaaaagaa
catgctcagcttattagaagcttcggcgttgaacagcttattgttgcggtcaacaagatg
gatgccatcggctactcgaaagaaagatttgagttcatcaaggttcaacttggtagtttt
ctgcggtcatgcaatttcaaagattcatctgttacctggattcctcttagtgctgtcgaa
aatcagaatttgatcaaaattccttctgatgtccgtttaacttcctggtatcaaggattt
tgtctcttggatgctatagattccttgcagcttccatctcgggatgtttcaaagcccctc
attcttcctatctgtgatgttatcaagtctcagtcaacaggacagtttgcagcctttgga
aaattagagactggagctattcgaattggttcaaaggttttaatttcaccttgtggggaa
gtggcggcagtgaaatccatcgagcgggattcaaattcatgtgacatagcaagagctggt
gataatgtagcggttagtttacagggtatcgatgggagtaagctaataccaggtgggatt
ctttgcaaccctggtttcccagtgcctgtctctaacttcttggagctaagggttctagtg
ttagacgtcaccattcctatccttattggctatcaggtcgaatttcacatacatcatgtg
aaggaggctgcgagggttacgaaaatcgtggcattgcttgacaaggctggcaaaccaagc
aaaactgcacctcgttttcttaagtcaaagcagaatgcagttgtgcaggttaccttagac
gctccggtctgtgttcaagaattctccaaatgccgagctcttggcagggcattcttaagg
tcttctggaagcacgatcgctgttggagtcgtaacgcgggtactccggcaagatcagaac
tga
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